barSeed - Barley Seed Development Database

Probe CUST_18762_PI390587928

Source Contig U35_15054

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18762_PI390587928	Hv_44K_v2	ACGACTGTTATAATGTACCCAGATTTTGTCAGTTACAGTTAGCAGTTACCTTATGTGTTT	705	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK355603	906	2e-24	722 - 781	100	60 / 60	plus	ABC02461 ABC02462 ABC28922
JLOC1	JLOC1_51292.1	831	8e-25	587 - 646	100	60 / 60	plus
Harvest21	ABC28922	366	3e-25	237 - 296	100	60 / 60	plus	ABC28922
Harvest21	ABC02462	822	3e-25	706 - 765	100	60 / 60	plus	ABC02462
Harvest21	ABC02460	495	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_30146	502	3e-25	411 - 470	100	60 / 60	plus
Harvest35	U35_15054	824	3e-25	706 - 765	100	60 / 60	plus

Contig Sequence (824 bp)

>U35_15054 824 Hv_44K_v2
GATCCACCACTCGCGCCTCTCTCGCCCTTCCCGCCGCCGCCGCCGCCGCCGCTCCCCTCG
CCGCAGCAGCAGCCGCAGCCATGGGGCGCATGCACAGTCGCGGGAAGGGCATCTCGTCGT
CGGCGCTGCCGTACAAGAGGACTCCACCGAGCTGGGTCAAGACCGCCGTCGCCGATGTGG
ACGAGTTAATCACCAAGGCCGCGAAGAAGGGCCAGATGCCGTCGCAGATCGGCGTCCTGC
TCCGTGACCAGCACGGCATCCCCCTCGTCAAGAGCGTCACCGGGAGCAAGATCCTTCGCA
TCCTCAAGGCCCATGGGCTGGCACCAGAGATCCCGGAGGACCTCTACTTTCTGATCAAGA
AGGCGGTGGCGATAAGGAAGCACCTGGAGAGGAACAGGAAGGACAAGGACTCTAAGTTCA
GACTCATCCTTGTGGAGAGCAGGATCCACCGCCTCGCTCGCTACTACAAGCGCACCAAGA
AGCTCCCACCCACCTGGAAGTACGAGTCTACCACCGCCAGCACTCTGGTGGCCTAAGGGA
GATATGCATCTGGTGTGCTCTTAGCTGATTAAAGCTTGATTGTTCCAGAAACCATTCTTA
TGTAACGCTTTATGAGAGTTTGGAGCCAAGTCGATGCTGCAAATTTTCTATGTTTGACTG
GAGGATGCTGTAAAACCTTTGTTGTTTCACTGTTCTGTCTGTTAAACGACTGTTATAATG
TACCCAGATTTTGTCAGTTACAGTTAGCAGTTACCTTATGTGTTTTCAGAAAAAAAAAAA
AAAAAAAGCTCATGTTGCTCTTTGGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15054 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02400.1	152	3e-99	protein\|40S ribosomal protein S13, putative, expressed
Brachypodium v1_2	Bradi3g13800.1	152	7e-101
Arabidopsis v10	AT4G00100.1	151	7e-89	\| Symbols: ATRPS13A, RPS13, PFL2, RPS13A \| ribosomal protein S13A \| chr4:37172-38123 FORWARD LENGTH=151