barSeed - Barley Seed Development Database

Probe CUST_18761_PI390587928

Source Contig U35_15055

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18761_PI390587928	Hv_44K_v2	AGTTCTGTCTGGTTACTTTTGGCATGCATCCACATTTCATTCAGTTAAACTTTTGACGTC	757	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.518	1.187	1.145	0.913	0.426	0.424
Raw	39735.133	48406.167	41419.900	51260.667	8479.803	9233.627

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363524	820	2e-24	713 - 772	100	60 / 60	plus	ABC02461 ABC02462 ABC40542
JLOC1	JLOC1_36545.1	1086	1e-22	817 - 875	98	59 / 60	plus
Harvest21	ABC02461	891	2e-22	729 - 783	100	55 / 55	plus	ABC02461
Harvest35	U35_15055	890	3e-25	758 - 817	100	60 / 60	plus
Harvest35	U35_47516	408	5e-23	253 - 312	97	58 / 60	plus

Contig Sequence (890 bp)

>U35_15055 890 Hv_44K_v2
TCGAGCACTGTTGGCCTAGGGCCTCAATCGCGCCGCCGCTCGTGCCCCTCTAGCCCTTCG
CGCCGCTGCTGCTGCAGGCAACCGCCGCCGTCGTCGCCGGAGCTAAACCCCTCGCCTGAC
GCCATGGGGCGCATGCACAGCCGCGGGAAGGGTATCTCGTCGTCGGCGCTGCCGTACAAG
AGGACTCCCCCGAGCTGGGTCAAGACCGCCGTCGCTGATGTGGATGAGTTGATCACGAAG
GCTGCGAAGAAGGGTCAGATGCCCTCGCAGATCGGTGTTCTGCTCCGCGACCAGCACGGT
ATCCCCCTCGTGAAGAGTGTTACCGGAAGCAAGATCCTCCGCATCCTCAAGGCTCATGGC
CTGGCGCCGGAAATCCCCGAGGATCTGTACTTTTTGATTAAGAAGGCCGTGGCCATTAGG
AAGCATCTTGAGAGGAACAGGAAGGACAAGGACTCCAAATTCAGGCTCATTCTTGTTGAG
AGCAGGATCCACCGTCTTGCCCGTTACTACAAGCGCACCAAGAAGCTCCCGCCCACCTGG
AAGTACGAGTCTACCACAGCCAGCACTCTGGTGGCTTAGGAGGGCTCTTCATCTGGTGTG
CTCTTACCAGCCTCAGGATGGTCTTGTTCTACATATCATCAATTTTATGTAACGCTTTTG
AGTTTGGAGCGATTTAGATGAACAAGAGACCAAATTTTCTATGTTTACTCGGAGAATCCC
ATAAACCATTTTTGGTTTTGCAAAAAAAAAAAAAAAAAGTTCTGTCTGGTTACTTTTGGC
ATGCATCCACATTTCATTCAGTTAAACTTTTGACGTCAAAAAAAAAAAAAAAAAATTTGT
GTTGTGATTGTAGCGAGTGCCTCGCTAGTTTCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_15055 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g02400.1	152	6e-99	protein\|40S ribosomal protein S13, putative, expressed
Brachypodium v1_2	Bradi3g13800.1	152	2e-100
Arabidopsis v10	AT4G00100.1	151	2e-88	\| Symbols: ATRPS13A, RPS13, PFL2, RPS13A \| ribosomal protein S13A \| chr4:37172-38123 FORWARD LENGTH=151