barSeed - Barley Seed Development Database

Probe CUST_18744_PI390587928

Source Contig U35_27036

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18744_PI390587928	Hv_44K_v2	AGCTGTATATTTATGACAGGAATTATGACTGGAGTCTCATTTGGTTAATTTCTACTGCTG	261	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59248.4	730	2e-24	261 - 320	100	60 / 60	plus	None
MLOC	MLOC_59248.2	1370	2e-24	273 - 332	100	60 / 60	plus	ABC14617
MLOC	MLOC_25056.4	2040	7e-23	527 - 583	100	57 / 57	minus	ABC10945
MLOC	MLOC_25056.1	2140	7e-23	537 - 593	100	57 / 57	minus	ABC10945
MLOC	MLOC_25056.3	2040	7e-23	537 - 593	100	57 / 57	minus	ABC10945
MLOC	MLOC_25056.2	1909	7e-23	634 - 690	100	57 / 57	minus	None
MLOC	MLOC_25056.5	2215	7e-23	624 - 680	100	57 / 57	minus	ABC10945
Harvest21	ABC24589	320	1e-24	262 - 320	100	59 / 59	plus
Harvest35	U35_27036	321	3e-25	262 - 321	100	60 / 60	plus

Contig Sequence (321 bp)

>U35_27036 321 Hv_44K_v2
AGGGTACTCCATCTCATGCACAGTTTATCCCAGTTCGAGCTATTTTCTCACCTATACTTT
TGCTCCAAGTGGTTGCTGTATTGTTTGCCGCTTGGAGATTCTTTGAAAGGCTTGTTATTA
AATTACAAGATGGAATTGTTAGTGAAAGATATATTTCTGTCTCATCAAAGATTGATGAGT
TGTTTATGATGGTACAATATGGTTCAAGGTTCTAAATGCTCTTTGTTTTCTCACTTCATT
ACCTCCTCCTTGTACAGTAAAAGCTGTATATTTATGACAGGAATTATGACTGGAGTCTCA
TTTGGTTAATTTCTACTGCTG

Homology of Contig U35_27036 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None