barSeed - Barley Seed Development Database

Probe CUST_1871_PI390587928

Source Contig U35_2795

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1871_PI390587928	Hv_44K_v2	CTACCTTGCACTGCCTGCAGAAAAATACCCAAATATATTTTCGCCTGACTCATTGTTTGG	524	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK371064	1932	2e-24	725 - 784	100	60 / 60	plus	ABC06761
MLOC	AK363165	1850	2e-24	615 - 674	100	60 / 60	plus	ABC06761
MLOC	MLOC_43329.4	522	2e-24	329 - 388	100	60 / 60	minus	ABC06761
MLOC	MLOC_43329.6	1248	2e-24	308 - 367	100	60 / 60	minus	ABC06761
MLOC	MLOC_43329.5	1648	2e-24	329 - 388	100	60 / 60	minus	ABC06761
Harvest21	ABC06761	1800	3e-25	525 - 584	100	60 / 60	plus	ABC06761
Harvest35	U35_2795	587	3e-25	525 - 584	100	60 / 60	plus
Harvest35	U35_2794	1926	3e-25	651 - 710	100	60 / 60	plus

Contig Sequence (587 bp)

>U35_2795 587 Hv_44K_v2
GGACACTACCACCCGGGCTGCCCGGGCTGCGACCACGACCGGACCAAGGAGCTCCAGACC
GGGCTGCCCTACAAGGAATTCGCCTACGTCTGGATGATCTGTCTCACCACCGCTTTACCA
ATATCGTCATTGTTCCCCTTCTTGTATTTCATGATAAGAGACTTGCATGTTGCAAAAAGA
ACAGAAGATATAGGGTTCTATGCTGGTTTTGTAGGTGCTTCTTTTATGTTTGGTAGATGT
TTGACTTCAACTCTTTGGGGAATAGCAGCAGATCGTATTGGGAGGAAGCCTGTTGTTGTG
TTTGGCATTCTCTCTGTGGTGATATTTAATACTTTGTTTGGGCTTAGTGTCACCTATTGG
ATGGCAATAGCTACAAGGTTTCTCCTTGGCGCTTTAAATGGCTTACTTGGACCAATGAAG
GCTTATGCTATTGAAGTTTGCCGACCTGAACATGAACCTCTAGCACTATCACTTGTCAGC
ACGGCATGGGGTATAGGTCTCATCATTGGTCCTGCTCTTGGAGGCTACCTTGCACTGCCT
GCAGAAAAATACCCAAATATATTTTCGCCTGACTCATTGTTTGGAAG

Homology of Contig U35_2795 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g04104.1	420	6e-110	protein\|major facilitator superfamily antiporter, putative, expressed
Brachypodium v1_2	Bradi4g26366.1	462	2e-106
Arabidopsis v10	AT5G13740.1	486	4e-75	\| Symbols: ZIF1 \| zinc induced facilitator 1 \| chr5:4432689-4436483 FORWARD LENGTH=486