barSeed - Barley Seed Development Database

Probe CUST_18700_PI390587928

Source Contig U35_25603

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18700_PI390587928	Hv_44K_v2	GACGCCGCCCAACAACACGAACGTGATGACCGGGACGAAGGCGCTGGTGCTGCCGTTCGG	448	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69899.3	1749	2e-24	1478 - 1537	100	60 / 60	plus	ABC18746 ABC47164
MLOC	MLOC_69899.4	1985	2e-24	1236 - 1295	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
MLOC	MLOC_69899.2	2132	2e-24	1383 - 1442	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
MLOC	MLOC_69899.1	2211	2e-24	1537 - 1596	100	60 / 60	plus	ABC18746 ABC18837 ABC47164
JLOC1	JLOC1_46346.1	2166	8e-25	1393 - 1452	100	60 / 60	plus
Harvest21	ABC22631	507	1e-24	449 - 507	100	59 / 59	plus
Harvest35	U35_25603	508	3e-25	449 - 508	100	60 / 60	plus

Contig Sequence (508 bp)

>U35_25603 508 Hv_44K_v2
CCTACACCAACACGCAGGGCACCTTGGACAACACCACCGTCGCCGGCATCCTCGAGTACG
AGCATCAGGACCCCGCCACCGCCAAGAACCTGCCCATCTTCAGGCCGACCCTGCCGCAGA
TCAACGACACCAACGCCGTGGCCAACTACACCGCGAAGCTGCGCAGCCTGGCGAGCGCCG
CGTACCCGGCGACCGTGCCGCAGGTGGTGGACCGGGAGTTCCTTTTCACCGTCGGCCTCG
GCACCCACCCGTGCGCGCCCGGCTCCCCCGTGAACGGGAGCACGTGCCAGGGCCCCAACG
GGACGTCCCGGTTCGCGGCGTCCATCAACAACGTCTCCTTCGTGCTCCCGACGACGGCGC
TGCTGCAGTCGCACTACACCGGGATGTCCAAGGGCGTGTACGCCTCCAACTTCCCCTTCG
CGCCGCCGCACCCGTTCAACTACACGGGGACGCCGCCCAACAACACGAACGTGATGACCG
GGACGAAGGCGCTGGTGCTGCCGTTCGG

Homology of Contig U35_25603 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g38410.1	550	4e-82	protein\|laccase precursor protein, putative, expressed
Brachypodium v1_2	Bradi2g23350.1	578	8e-84
Arabidopsis v10	AT5G60020.1	577	9e-60	\| Symbols: LAC17, ATLAC17 \| laccase 17 \| chr5:24168072-24170223 FORWARD LENGTH=577