barSeed - Barley Seed Development Database

Probe CUST_1865_PI390587928

Source Contig U35_17501

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1865_PI390587928	Hv_44K_v2	GGGTGATGTATTTTATCTGGTAATAGGATATAGGTGTTAAGTTTCAAACCTTGTCCATCT	1636	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363848	2855	2e-24	2730 - 2789	100	60 / 60	plus	ABC07147
MLOC	MLOC_59944.6	1782	2e-24	1517 - 1576	100	60 / 60	plus	ABC07147
MLOC	MLOC_59944.5	2081	2e-24	1963 - 2022	100	60 / 60	plus	ABC07147
MLOC	MLOC_59944.7	1666	2e-24	1401 - 1460	100	60 / 60	plus	ABC07147
JLOC1	JLOC1_39052.6	1805	8e-25	1476 - 1535	100	60 / 60	plus
JLOC1	JLOC1_39052.5	2205	8e-25	1876 - 1935	100	60 / 60	plus
JLOC1	JLOC1_39052.4	1839	8e-25	1510 - 1569	100	60 / 60	plus
JLOC1	JLOC1_39052.3	1868	8e-25	1539 - 1598	100	60 / 60	plus
JLOC1	JLOC1_39052.2	2124	8e-25	1795 - 1854	100	60 / 60	plus
JLOC1	JLOC1_39052.1	1802	8e-25	1473 - 1532	100	60 / 60	plus
Harvest21	ABC07147	1372	3e-25	1237 - 1296	100	60 / 60	plus	ABC07147
Harvest35	U35_17501	1772	3e-25	1637 - 1696	100	60 / 60	plus

Contig Sequence (1772 bp)

>U35_17501 1772 Hv_44K_v2
GAGGGGGTGATCGCCGCCGCCGCCGCGGCCGTCGCCGGGTCCGGGCTGGGGCTCTGGCTC
ATGCCGCCGGCGCTCGCGGACTCCGGCGAGGTGGCCCGCGCCGCCGCGCCCGGCCAGATC
GCCGCGGCCGGGCATGATCTCGGCGGCCGCCGGCGCAGTCGGGGAGCGGCACGAGAAGCG
GAGGAGGTTCCTGCTCGCAGACTCGTATCGTCGAAGGGTGTTCTTCAATTACGAGAAAAG
GATACGGCTTCGCAGCCCCCCTGAAAAGATTTTTGAGTCTTCTGCTTCTGTGCGAAAACC
GAATGGGGAAATGTTCATGTTGCCTGCTGACTTGATGAGAGCGGTGGATCCTGGTTTCCC
TCCATCGGAGTCAAACGTAGTGCGGGAAGGGAGGCTAAGGGGGGAACCCAGCCCTGGAGA
GTTGCATTGTGCTCCATCCAAATTCTTCGTCCTGTTTGACACAAACACCGATGGTCTCAT
CTCGTTTGCCGAGTACATCTTTTTTGTTACATTACTCAGCATTCCTGAGTCAAGCTTCAG
TGCGGCCTTCAAAATGTTTGACGTCGACCTCAGTGGTTAATTTCTCTTGTCGCCCAGAAA
AAAAGACCTGCTCTTTATGAGCATGTTCAATCATCTGGCTTGTTAGTTGATGGTAAAAGA
AGGGGAGATAGACAAAGAAGAGTTCAAGAAAGTAATGGCATTGATGCGGTCCTATAACAG
ACAAGGAGCTGCCCACAGGGATGGCTTACGTACAGGATTTAAAGTTGGCCAGTCTGTGGA
AAATGGTGGGGTCGTTGAGTATTTCTTTGGTAGTGATGGGAATGAACCTCTACACTTTGA
TAAGTTCACAAGTTTTTTGAAGGAATTGCATGAAGAGATTATTCGTCTGGAATTCAGTCA
TTATGATGTCAATTCGACAAACACTATCCCAGCAAAGGATTTTGCACTGTCCATGGTGGC
TTCTGCTGACATGAATCACATTAGCAAGCTACTTGATAGAGCTGATACATTGGGCAATGA
CCCTTATCTCAAGCACTTACGCATTACGTTTGAGGAGTTTAAGGCATTTGCGGATTTACG
TCGAAGATTGGAATCATTGACGATGGCTATATTTGCTTATGGTCAAGTAAATGGGCAATT
GACAAAGCAGGATCTGAAGCGTGCAGCACAGCATGTCTGTGGTGTTGAATTAACTGACAG
AGTGGTGGACATCATTTTCCATGTGTTTGACACGAACAATGATGGGCACCTGAGCTCAGG
GGAGTTTCTGAGAGCACTTCAAAGACGAGAAGCCGATATTCATCAGCCAGCGACGCGAGG
AGGTCCCATGGGCTGGCTGAACCCTAAAAACCGTTCTTCGCTTCTGCAGATGCTGGGCTA
GTAGAGTTTTTTATCGTTGCAAGATTTTTCTTCTTAAGCCTTGGGTCAGGTACCATTTGA
ATGGTATTTCAGCCAAGTCTAGGTCACATAAGAATGATAAGATTAGTTCATCCAGTCTTG
TTATAGTATCCCGTTCTGTTGTTACTGCTCAGGACTGGGAGTGAATTTTGCTGTAAATAT
CGTGTAGGTATAGCGGTTGATCCGGTTGTACATAGTGTCTTTGGTGTGCTCTCTCAGAGT
CTCAGTACATGGGTGAGGGTGATGTATTTTATCTGGTAATAGGATATAGGTGTTAAGTTT
CAAACCTTGTCCATCTTATCTGTTCCATTTTTATGTATTTATAGACAGCATTTCATAATA
TGACAGCTGCAGCTTTGTCGATATTTATTTCT

Homology of Contig U35_17501 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g42430.2	473	0.0	protein\|EF hand family protein, putative, expressed
Brachypodium v1_2	Bradi5g14860.1	464	0.0
Arabidopsis v10	AT4G32060.1	498	2e-151	calcium-binding EF hand family protein \| chr4:15501134-15503321 FORWARD LENGTH=498