- Probe CUST_1864_PI390587928
- Source Contig U35_17502
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1864_PI390587928 | Hv_44K_v2 | TACGTTTGAGGAGTTTAAGGCATTTGCGGATTTACGTCGAAGATTGGAATCATTGACGAT | 533 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.373 | 0.430 | 2.200 | 3.183 | 1.138 | 1.034 |
| Raw | 65.803 | 119.654 | 536.428 | 1247.648 | 157.510 | 153.078 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_59944.2 | 1569 | 2e-24 | 1294 - 1353 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.6 | 1782 | 2e-24 | 925 - 984 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.3 | 1533 | 2e-24 | 924 - 983 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.5 | 2081 | 2e-24 | 1371 - 1430 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.4 | 1910 | 2e-24 | 1301 - 1360 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.7 | 1666 | 2e-24 | 809 - 868 | 100 | 60 / 60 | plus | ABC07147 |
| JLOC1 | JLOC1_39052.6 | 1805 | 8e-25 | 884 - 943 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.5 | 2205 | 8e-25 | 1284 - 1343 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.4 | 1839 | 8e-25 | 918 - 977 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.3 | 1868 | 8e-25 | 947 - 1006 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.2 | 2124 | 8e-25 | 1203 - 1262 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.1 | 1802 | 8e-25 | 881 - 940 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32647 | 533 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07147 | 1372 | 3e-25 | 645 - 704 | 100 | 60 / 60 | plus | ABC07147 |
| Harvest21 | ABC07145 | 596 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_37044 | 533 | 3e-25 | 420 - 479 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17502 | 596 | 3e-25 | 534 - 593 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17501 | 1772 | 3e-25 | 1045 - 1104 | 100 | 60 / 60 | plus |
Contig Sequence (596 bp)
>U35_17502 596 Hv_44K_v2 CATTGTGCTCCATCCAAATTCTTCGTCCTGTTTGACACAAACACCGATGGTCTCATCTCG TTTGCCGAGTACATCTTTTTTGTTACATTACTCAGCATTCCTGAGTCAAGCTTCAGTGCG GCCTTCAAAATGTTTGACGTCGACCTCAGTGGGGAGATAGACAAAGAAGAGTTCAAGAAA GTAATGGCATTGATGCGGTCCTATAACAGACAAGGAGCTGCCCACAGGGATGGCTTACGT ACAGGATTTAAAGTTGGCCAGTCTGTGGAAAATGGTGGGGTCGTTGAGTATTTCTTTGGT AGTGATGGGAATGAACCTCTACACTTTGATAAGTTCACAAGTTTTTTGAAGGAATTGCAT GAAGAGATTATTCGTCTGGAATTCAGTCATTATGATGTCAATTCGACAAACACTATCCCA GCAAAGGATTTTGCACTGTCCATGGTGGCTTCTGCTGACATGAATCACATTAGCAAGCTA CTTGATAGAGCTGATACATTGNGCAATGACCCTTATCTCAAGCACTTACGCATTACGTTT GAGGAGTTTAAGGCATTTGCGGATTTACGTCGAAGATTGGAATCATTGACGATGGC
Homology of Contig U35_17502 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g42430.2 | 473 | 1e-117 | protein|EF hand family protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g14860.1 | 464 | 8e-126 | |
| Arabidopsis v10 | AT4G32060.1 | 498 | 1e-83 | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498 |