- Probe CUST_1863_PI390587928
- Source Contig U35_17503
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_1863_PI390587928 | Hv_44K_v2 | ATAGAGCTGATACATTGGGCAATGACCCTTATCTCAAGCACTTACGCATTACGTTTGAGG | 611 | GeneList: tan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.390 | 0.414 | 2.385 | 3.885 | 1.162 | 1.099 |
| Raw | 55.915 | 93.309 | 474.580 | 1238.906 | 131.197 | 132.761 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK363848 | 2855 | 2e-24 | 2003 - 2062 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.1 | 1663 | 2e-24 | 1371 - 1430 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.2 | 1569 | 2e-24 | 1245 - 1304 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.6 | 1782 | 2e-24 | 876 - 935 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.3 | 1533 | 2e-24 | 875 - 934 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.5 | 2081 | 2e-24 | 1322 - 1381 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.4 | 1910 | 2e-24 | 1252 - 1311 | 100 | 60 / 60 | plus | ABC07147 |
| MLOC | MLOC_59944.7 | 1666 | 2e-24 | 760 - 819 | 100 | 60 / 60 | plus | ABC07147 |
| JLOC1 | JLOC1_39052.6 | 1805 | 8e-25 | 835 - 894 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.5 | 2205 | 8e-25 | 1235 - 1294 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.4 | 1839 | 8e-25 | 869 - 928 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.3 | 1868 | 8e-25 | 898 - 957 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.2 | 2124 | 8e-25 | 1154 - 1213 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_39052.1 | 1802 | 8e-25 | 832 - 891 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC32647 | 533 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07147 | 1372 | 3e-25 | 596 - 655 | 100 | 60 / 60 | plus | ABC07147 |
| Harvest21 | ABC07146 | 671 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC07145 | 596 | 4e-24 | 485 - 544 | 98 | 59 / 60 | plus | |
| Harvest35 | U35_37044 | 533 | 3e-25 | 371 - 430 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17503 | 671 | 3e-25 | 612 - 671 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17501 | 1772 | 3e-25 | 996 - 1055 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17502 | 596 | 4e-24 | 485 - 544 | 98 | 59 / 60 | plus |
Contig Sequence (671 bp)
>U35_17503 671 Hv_44K_v2 CTGGAGAGTTGCATTGTGCTCCATCCAAATTCTTCGTCCTGTTTGACACAAACACCGATG GTCTCATCTCGTTTGCCGAGTACATCTTTTTTGTTACATTACTCAGCATTCCTGAGTCAA GCTTCAGTGCGGCCTTCAAAATGTTTGACGTCGACCTCAGTGGACGTGTTTTGTTTACTG AAGCTGCTGAAGTTAATTTCTCTTGTCGCCCAGAAAAAAAGACCTGCTCTTTATGAGCAT GTTCAATCATCTGGCTTGTTAGTTGATGGTAAAAGAAGGGGAGATAGACAAAGAAGAGTT CAAGAAAGTAATGGCATTGATGCGGTCCTATAACAGACAAGGAGCTGCCCACAGGGATGG CTTACGTACAGGATTTAAAGTTGGCCAGTCTGTGGAAAATGGTGGGGTCGTTGAGTATTT CTTTGGTAGTGATGGGAATGAACCTCTACACTTTGATAAGTTCACAAGTTTTTTGAAGGA ATTGCATGAAGAGATTATTCGTCTGGAATTCAGTCATTATGATGTCAATTCGACAAACAC TATCCCAGCAAAGGATTTTGCACTGTCCATGGTGGCTTCTGCTGACATGAATCACATTAG CAAGCTACTTGATAGAGCTGATACATTGGGCAATGACCCTTATCTCAAGCACTTACGCAT TACGTTTGAGG
Homology of Contig U35_17503 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os04g42430.2 | 473 | 5e-86 | protein|EF hand family protein, putative, expressed |
| Brachypodium v1_2 | Bradi5g14860.1 | 464 | 7e-91 | |
| Arabidopsis v10 | AT4G32060.1 | 498 | 2e-63 | calcium-binding EF hand family protein | chr4:15501134-15503321 FORWARD LENGTH=498 |