barSeed - Barley Seed Development Database

Probe CUST_18637_PI390587928

Source Contig U35_25631

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18637_PI390587928	Hv_44K_v2	TCCATCGAAATGGCAAACATAGCGCTCGTGCTCACGGTTTGCCTCTTGGGCTTCTACGCG	5	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.128	2.183	3.337	1.893	0.811	0.722
Raw	9.308	30.393	39.772	34.398	3.577	3.571

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_63480.1	1771	2e-24	1687 - 1746	100	60 / 60	minus	ABC14427 ABC14589
MLOC	AK376200	1707	3e-21	27 - 86	97	58 / 60	plus	ABC14427 ABC14589
JLOC1	JLOC1_41582.1	1757	8e-25	1684 - 1743	100	60 / 60	minus
Harvest21	ABC26481	572	3e-25	6 - 65	100	60 / 60	plus
Harvest35	U35_25631	572	3e-25	6 - 65	100	60 / 60	plus

Contig Sequence (572 bp)

>U35_25631 572 Hv_44K_v2
TCAGATCCATCGAAATGGCAAACATAGCGCTCGTGCTCACGGTTTGCCTCTTGGGCTTCT
ACGCGCCCGCCCCTTCCCTGGCGTCGTCCTCCAACAACAACAACGACGACTTCCTCCAGT
GCCTCTCGACCAACATCCCCAGCCAGCTCGTGCTGACGCCGACCTCGCCGTCGTTCACGC
CGCTCCTGGTCTCGTCCATCAGGAACGCCAGGTTGGTGGCGCCGGCGAAGGCGAACCCTC
CGCTGTGCATCGTGACGCCCACAAACGCGTCGCACGTCCAGGCCGTCGTGCGCTGCGGGC
GCCGCCACAGCGTGCGCGTCCGCGTGCGCAGCGGCGGGCACGACAACGAGGGCCTCTCGT
ATCGATCGACCACCCCCAACGGCGAGAAGTTCGCGGTGATCGACCTCGCCAAGCTCCACG
CCATCCATGTCAACCCACATGAGGCCACCGCGTGGGTCCAGACCGGGGCGACGACCGGAG
AGCTATACTACCGGGTCGCCACGGCGGCTCCAGGGCTGGGCTTCCCGGCTAGCGTGTGCC
CGACGGTTGGCGTGGGGGGTATCATCAGCGGC

Homology of Contig U35_25631 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g02967.1	521	2e-51
Arabidopsis v10	None