barSeed - Barley Seed Development Database

Probe CUST_18613_PI390587928

Source Contig U35_6824

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18613_PI390587928	Hv_44K_v2	ACTTGGAAGGGAGAGTTTGCCCTAGCCACCTAGAATTAGGTGAGGAAATGTGCCAAAAAA	918	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.641	7.277	1.413	0.638	0.383	0.275
Raw	168.562	348.253	55.816	40.906	8.459	6.535

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_69163.1	1276	2e-24	247 - 306	100	60 / 60	minus	ABC22479
Harvest21	ABC22479	978	3e-25	823 - 882	100	60 / 60	plus	ABC22479
Harvest35	U35_6824	1074	3e-25	919 - 978	100	60 / 60	plus

Contig Sequence (1074 bp)

>U35_6824 1074 Hv_44K_v2
TCGAGCACTGTTGGCCTAATCGATCGATCCACCGCACGCAGTCGGCCACTCCTCGCCCTC
CATCTCTCTCTCTCTCTCTCCCACACATCGCCGGCCGAAGCCAGCCAGCATGACGGCGAA
GGTGGCGGGCGGCCGGAAGCGCGGGGCGGAGGCCTTCTTGGAGGAGGACCCCTTCGCGGC
GCTCCCCCCGCCGCTGAACACGAAGAGGGGGCGATGCTCGCCGTCTGCCGCCGCCGACGT
GGCGGAGCTCGGGGTCAGCATGGACTTCGACCCCGTCGATGCGCTCCAGCTCATCTTCCC
CGGCGCCGATCCGCAGCTTCTTCGAGGCTATTTTGAAGCATCGGGAAATGTGTTGGATGC
TGCAATCAGAGGCTTCAAGGATCATTTGGCGTCTGGTTCAGCACCGACCAATGCTGATGC
GGCCTCATCTAGAGTGGCATCTGATGTGCCGGTGACGAAGATGAATAATGCGACAAACGT
CACTGAATGGGCGGAGCTAATTGTCAAGGAGATGTCAGCTGCTTCAGATTTGATCGACGC
CAAGAATCGAGCCTCCAGGATACTCGAATTGTTCGACAAATCTGCCGCAAACTGTAACAC
TCCTGATGAAAAGCAGAAAATGCATGAGGAGCACAAGATACTGAAGCAGATGCTGGGAGG
CCTGCTTCACCAGAACGGCGTTCTGAAGAGGGCCTTTCTTATCCAGCACAACAGGCTCAA
GGACTACCAGGACATGGTGCAGGAACGGTCCCAGTTCAAGGAGATCGTCGACAAGTACCA
GCAGCAGATCAAGGCGCTAGAGGAGAGGAACTATGTGCTGTCGTTGCATCTCGCGCAGTC
GGATCACCGGAGTGGCATATCGGGGCACCGCAACCCCGGCGTCTTTTAGGGGTAGGCGGC
TACTGCATCCTCCGTGAAACTTGGAAGGGAGAGTTTGCCCTAGCCACCTAGAATTAGGTG
AGGAAATGTGCCAAAAAAATATCATGGGATATTTAAATGTGTGATTTGTATTAAAAATGT
TTAGTATGTATTTGAAGGCGTTTATCATTTTTTTTCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_6824 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g43520.1	753	6e-69	protein\|cytochrome P450 71D7, putative, expressed
Brachypodium v1_2	Bradi1g30390.1	259	2e-119
Arabidopsis v10	None