barSeed - Barley Seed Development Database

Probe CUST_18608_PI390587928

Source Contig U35_6829

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18608_PI390587928	Hv_44K_v2	AAAGCTGCCAGATGTGTTGCACCTGGACAGTTGTTTTTCAGCAAGGGTGGTTTTTAACAG	575	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364182	1999	7e-23	1658 - 1717	98	59 / 60	plus	ABC14617
MLOC	MLOC_59248.2	1370	7e-23	1034 - 1093	98	59 / 60	plus	ABC14617
MLOC	MLOC_59248.1	1381	7e-23	1043 - 1102	98	59 / 60	plus	ABC10945 ABC14617
MLOC	MLOC_59248.3	1235	7e-23	899 - 958	98	59 / 60	plus	ABC14617
JLOC1	JLOC1_38545.3	1259	4e-23	923 - 982	98	59 / 60	plus
JLOC1	JLOC1_38545.2	1323	4e-23	987 - 1046	98	59 / 60	plus
JLOC1	JLOC1_38545.1	1313	4e-23	977 - 1036	98	59 / 60	plus
Harvest21	ABC14617	736	3e-25	576 - 635	100	60 / 60	plus	ABC14617
Harvest35	U35_6829	736	3e-25	576 - 635	100	60 / 60	plus

Contig Sequence (736 bp)

>U35_6829 736 Hv_44K_v2
AAAAAAGTTCTTGTCAAAGAGGTGCAGAGACTTCAGTTAGCATTGGGAGAGCAGAGCAAA
ATGGCAAAGCTTAGCCAACAGCAGTGTGAGAGGCTAAAGAATGAACGTATCTTGTGTCGT
ATTTGCTTTGAGAGGGACATCGGCATTGTTTTGCTTCCATGCCGCCATCATGTTCTATGC
GAACCCTGCTCTGACAAGTGCCAATCATGCCCGATTTGTCGAGTGCCTATCGAGAGCAAG
TTATCCGTTAACGATGCAGTGAATTCAGATGAGCCATCAAGCGACATCGTCTAGAAGTTG
ACATGTTGACCATAGCATTAGAACATCAACTTGTTGTGCCAGCAACACACTGATTGCCAG
CAGAGGAAGACAAACTATTCCGGCTATGGATGAAGTCGAAAGGAAAGCTAGGATAAGTTT
CGTCTCGGAGTTGTCGAGAGGGCAATCAAGAGCCGTACCGCGTGCGCAATCCCTCTTCAG
CGATAGTATTACAGGAAGAAAGTGCGAGCTCGTTGATTCTCATCCATATATGGCGCCAGC
ACGAATAACCACTCGAATCGCCGAATTTCCTGGCGAAAGCTGCCAGATGTGTTGCACCTG
GACAGTTGTTTTTCAGCAAGGGTGGTTTTTAACAGCTGACAGGGGCACTCGAGGTTGTTC
CAACTGTTTTTTTTATAGAGTACATACAAAAGACCTCACTTCATCGGTTTTGACGAGTTA
AAAAAAAAAAAAAAAA

Homology of Contig U35_6829 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g29960.1	109	3e-51
Arabidopsis v10	None