barSeed - Barley Seed Development Database

Probe CUST_18604_PI390587928

Source Contig U35_6833

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18604_PI390587928	Hv_44K_v2	ACATCTCAGGACAAGTTGTCAACTTCCTAATAGCAGCAGCAACAATAGCATCGCCAGAAC	16	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356512	2123	2e-24	1431 - 1490	100	60 / 60	minus	ABC17600
MLOC	MLOC_15973.1	3454	2e-24	835 - 894	100	60 / 60	minus	ABC17600
MLOC	MLOC_15972.2	914	2e-24	577 - 636	100	60 / 60	minus	ABC17600
MLOC	MLOC_15972.1	1448	2e-24	770 - 829	100	60 / 60	minus	ABC17600
JLOC1	JLOC1_10985.2	2936	8e-25	2396 - 2455	100	60 / 60	plus
JLOC1	JLOC1_10985.1	2923	8e-25	2383 - 2442	100	60 / 60	plus
JLOC1	JLOC1_10984.2	2286	8e-25	741 - 800	100	60 / 60	minus
JLOC1	JLOC1_10984.1	1495	8e-25	752 - 811	100	60 / 60	minus
Harvest21	ABC17600	652	3e-25	22 - 81	100	60 / 60	minus	ABC17600
Harvest35	U35_6833	1252	3e-25	17 - 76	100	60 / 60	minus

Contig Sequence (1252 bp)

>U35_6833 1252 Hv_44K_v2
AGGACTGACCGGACGGGTTCTGGCGATGCTATTGTTGCTGCTGCTATTAGGAAGTTGACA
ACTTGTCCTGAGATGTATGAGGACCAGGATACATTGGAGAGGGAGCTAAGATTTGCTGTT
GCTGCTGGCATCATTTCACAGTGGACTATTGGTGCCGTGCGAGGGTTTCCCACTGAAAGT
GCTACCCAGAACTTGAAGGAGCAAGTATATGTGCCTTCTATGTGGTGAACTGGTGATTGG
TTAACTAGTAAATCATTTCTGATGAAGGAGGCAGAAATTTATGTTATGAGCATGATTCAT
AGGTGGTGCAGAAGAAGTGAACAAGGATAATATTTTACCACAAGAGTTGACAGGTATAAG
GACACTTTAATCTGCGTGTTACGCAGGCAGTGAGCCACGCTTCATGCTGTCCAATCAGCG
GGGAACTCTTTTGTGCGAGTGTTTCCAGTCACAGAAGCACTATTGTAGCACTTGGTGGGG
ATAGGATTGATTGATGTGAAACCCCCACTTCTTTTTCTCCTTTTTCTTTTTGTATTTTCT
CTTTGCAGACCGGAGAATGCAGCACCCCGGTTCTGCTTCCTAGAAGCATATGTAGAAATT
TTGTAGAGTAAGCAACGCTAAGAACCTCCAGTAATTTGTTCATTCGCAGAATTCGGCGCC
TCTGCCGGTCATTTCTATCAGCGGCCGCTGAGGGATCAAGATTGACGGCATTCACTAGTT
TGACTCTAGGGTTGCCTCCCGGACTTGACGATGGCTGACAATGAAGAAGCCTCGTAGGCA
ACTGAAGACGGAGGTTTGAAGTCGTGGTTGATGATTCCAGCCAACGACGTATTCGCAAAA
GTGACTGTCGCCGGTCGAACACGGGTTTCCATATCGCCCTGTTGTCTTTGTCCCCAACGT
TAATTGCTTGAAATAGACTAAATCTATGATAGGTTACACCTTCCCAATTGTGTCCTGACC
AAGAGACAAAAACGATCGTAAAAGATAATATACCGGTGAAAGCCACTTTTGACTGGATGA
CTGGGATGCCAACAAGATCCTTCTTCTTCATCTCATCCAGAATTGTGGAATCATAAAGAA
ACCCCTCAATAGTCAACCTCTCCCAGATCATGGCACAGAAGACGCATGTATCTGCCGATT
CTTCCAGGTCTTGCAGATTATGGTGAAGATATGGCACCGGGGTTTCTTTTTCTGAAGCCT
TGTCTAGCCTGGCTTTGCCTATAGTGCCACCCAATTTATCGAGGTACTGGGA

Homology of Contig U35_6833 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None