barSeed - Barley Seed Development Database

Probe CUST_1858_PI390587928

Source Contig U35_17508

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1858_PI390587928	Hv_44K_v2	CGTCTTTTGCTACCAAACTACTTTTCACATGCGTGTCCATTTGCTGCGTTGTGTCAACTG	1040	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51098.1	2602	7e-23	1445 - 1504	98	59 / 60	minus	ABC13743 ABC14307
MLOC	MLOC_51097.4	1791	7e-23	1438 - 1497	98	59 / 60	minus	ABC13743 ABC14307
MLOC	MLOC_51097.1	2046	7e-23	1261 - 1320	98	59 / 60	minus	ABC13743 ABC14307
JLOC1	JLOC1_32610.1	1430	4e-23	1110 - 1169	98	59 / 60	plus
JLOC1	JLOC1_32609.1	1768	4e-23	1256 - 1315	98	59 / 60	minus
Harvest35	U35_17508	1131	3e-25	1041 - 1100	100	60 / 60	plus

Contig Sequence (1131 bp)

>U35_17508 1131 Hv_44K_v2
AAGCCAACGTTTAACGCAACAGCCAAAACAAAGAATTGTACAACATAATACACATGGTTC
CCATAATTACACCCCTCTCATACACTAAAAACAGTAAGGGCCAACTTTCAACAGGTTGCT
GTAACTATCTTTTCTTGGTATCTGCTTATCTCCTCCAAGAGGAGATCAGATCCCTTATTC
ACAGACCGATGCTTCTCTGCCAGCCGCCTGTTCTGTTATTATTGTATGTTCTTGATTACC
ATATGCATATATCTCCTTAGGAAGGAGACGAGACCCCCTAGCTCACAGCTGCTTCTTAAC
CAGAGCTTTGTTCTGCTCGATGTACGGGTAGGCTCTCTGGTACAGCGGCCGCTCACCGGC
ATCGTCGCTCAGGCTGTGGAGGATAGGTCACAACATAAGAATCGATCATCTGCTTTATCT
CGGCTTCGGACCCTGATTGCTCTCAAAGTCAGGAGGCCGATAAACCTTGATAACTACACT
CCTCCAGTTGAACTTCTTCAGATATTGCCACTGAAGTCTACTATTCGATCAAAGGACGTT
GGCAATCAAATTGGCCCAAATAACCCAAAATTTTCACCAGGAATGCAAGCTTTATTAGAT
CTTCTATTTGCTGTTGAAGGTTCTGTATCAGAGGCAGCGAAAGTTCTAGGCCTAAGCACT
GGTGCCCTGTCAAGGTTAATTCTATCAGATGATTCTCTGCGAGCAGCTGCAAATGAACTG
CGAGCCTCCAAGGGACTGAAGCCACTAAGATGATGCCCCTTTACAATGTTGTCATCTTCA
ACTGCGCCACAGGTGCCAAGATGTCTCATTGTTCATGATTTCATGGCATGCCATTGGAGC
TTATGCCCAATTCCCTACCGCAAGAAATGCAGAACATACACATGGTCTGTCTTATACAGG
GTCATCATCATGCTTGCTTGTTTGTCGCACACCATTGTAACCTTGTTGTTGTACAGTGCA
ATTGTACTTTCACATGTTGCCATCGCTTGATGATGCCTTCAACAAATTGGATCTATTAAA
TATAAGTTTGAGCGATATAACGTCTTTTGCTACCAAACTACTTTTCACATGCGTGTCCAT
TTGCTGCGTTGTGTCAACTGTCAAGCATGAACTCAAACAGAAAACATTGCC

Homology of Contig U35_17508 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g66379.1	247	5e-63	protein\|expressed protein
Brachypodium v1_2	Bradi2g57270.1	240	4e-69
Arabidopsis v10	None