barSeed - Barley Seed Development Database

Probe CUST_18495_PI390587928

Source Contig U35_11092

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18495_PI390587928	Hv_44K_v2	TGTAGGATTATGGATTGAGCCAAGACTAAAAGGAACGGTGTTGTTAAAGGCCGCCCTATG	426	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_73240.1	1412	7e-23	59 - 118	98	59 / 60	minus	ABC13312
JLOC1	JLOC1_48753.1	1465	4e-23	44 - 103	98	59 / 60	minus
Harvest35	U35_11092	545	3e-25	427 - 486	100	60 / 60	plus

Contig Sequence (545 bp)

>U35_11092 545 Hv_44K_v2
AGCGTCCGGCGTGGGTTGACGTGACGCCGGTGGAGGGGGCGTTGGTGGTCAACGTCGGCG
ACTACCTGCAGCTCATGTCCAACGACAGGTTCAAGAGCGTGGAGCACCGCGTGGTGGCTA
ATACCGTGGGGCCAAGGGTGTCGGCGGCTTGCTTCATTCGGCCGTGCGCGTCGTCGAAGA
GGGTGCTCACGCCGATCGTCATCGACGGCGACGGCGGCGCACGGTACAGGAGCACGATGG
TGGAGGAGATGTTCCGGCACTACAGGGTTAAGGGCCTCGACGGCACCTCCTCACTCCAGC
ATTTCAGGATTTGAATCGCATCCAATCGTACCACTATTAATATCCTAAACAAGCAAGATG
TTTGGATTTGCTAAAATAAGCTTGTGTTGATCGAGCGGTTCATATGCGAAAGTGGCCCCT
TTAATTTGTAGGATTATGGATTGAGCCAAGACTAAAAGGAACGGTGTTGTTAAAGGCCGC
CCTATGCGTAGGCCAGCCGAGATCTATATATTGACTTGCGAACTTTTCAAAAAAAAAAAA
AAAAA

Homology of Contig U35_11092 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None