barSeed - Barley Seed Development Database

Probe CUST_18478_PI390587928

Source Contig U35_23070

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18478_PI390587928	Hv_44K_v2	TCTGTATCAAGTAAGTGTCTACCATCTAACAGCAATCCTGGGGCTGCTAAACACAGAGAC	722	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	7.296	6.131	0.930	1.079	0.656	1.479
Raw	139.635	160.427	23.624	42.209	8.197	23.317

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC20943	783	3e-25	724 - 783	100	60 / 60	plus	ABC20943
Harvest35	U35_23070	782	3e-25	723 - 782	100	60 / 60	plus

Contig Sequence (782 bp)

>U35_23070 782 Hv_44K_v2
TCCCCCGGGTCTGCAGGAATTGGCACGAGGCTGGCCTTAGCTCTCCCCCCTCGCCCAACT
TGACCGAAGCTGCAGAAATTTCTGTGTGTAGCGCCACGGTTGCCTCCGGTGAAATTCACC
ATGGCCGAAGCCCCCTAGCTGCACCCCACCGCACCAGCCGCACCCCTTGAGACCCCTCGA
ATCATCGCCGCCGCTGGAGCTCGTAGAAGAGCCGATGTGGATCGAAGTTTCTGAACCAGT
AGAGCCTCCCGCCCTTGTTGAGGCCCCGCTCAGCCCCGAGCTCCGTAGCGCCTCCAACCA
CCAAAAATGGATGCCTCTCATTCCCACGAACACGTACATGGTCGGAGCGCGATGGGAGGT
GCACTGTGCCGCCGGTGAGCCTCGCCGGAAAATTGCCTCTGTTCTGCCACACACGCGTGG
GAGGTGGGAGAAGGACCCGACAGGAGGGCCCCGCCTGTCGGTGGGAGAGCCAAGCCTCGA
GGAGAGCAAACCCACTGATTGCGTTTGGAGAGGAGCACGATGTCGTCAACCCCGGAACCT
AGGAGTCAAGGATAGCAGCCTCGTGAGATAGGAATTTATCCAGGTCAGTTGTTCCTGTGG
GAATGGAGTCCCATGGGCACTAGAGAGTCCTCGAGTCGCTTCCGTTGTCAACCTTAGACT
TTTATTCAACCCAGTATACCTTCATGGTCTTGTAACCCAGATTTTGTATTTTGCTTGGAT
ATTCTGTATCAAGTAAGTGTCTACCATCTAACAGCAATCCTGGGGCTGCTAAACACAGAG
AC

Homology of Contig U35_23070 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None