barSeed - Barley Seed Development Database

Probe CUST_18426_PI390587928

Source Contig U35_44225

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18426_PI390587928	Hv_44K_v2	CATATTCAGCTTTGCAAGAATAGAGATGGTCAGAATATTTGGAGGATACTCACAAATTTG	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_42335.1	287	2e-24	77 - 136	100	60 / 60	plus	ABC41788
JLOC1	JLOC1_27440.1	277	8e-25	78 - 137	100	60 / 60	plus
Harvest21	ABC41788	595	3e-25	58 - 117	100	60 / 60	minus	ABC41788
Harvest35	U35_44225	595	3e-25	58 - 117	100	60 / 60	minus

Contig Sequence (595 bp)

>U35_44225 595 Hv_44K_v2
TTTTTTTTTTTTTTTTTAATCCAAATGATATTAAGCGCGATCCAGGAAAAAAAAAAACAA
ATTTGTGAGTATCCTCCAAATATTCTGACCATCTCTATTCTTGCAAAGCTGAATATGTAT
CTTTTGTTGTTATGTCTCAACTTTATTTGGATATTGATATATTAGCTTACTTCAAAATTA
AATTTTGTGTGATTATTATGCACTTAGTCTTAACTTGCCCAAGCTCCATAAAATTTCTGG
CTCCGTCACTGAGTGTGCTTCTTGTCTGCGACATCGCTAGGCATATCGAGCCCGGTCGGT
ATCTTCCCAGCGAAGTTGTATGTAGAGGTATCCGATCCAAGGTTACTTCTGTCGACCAGC
ACCATCGACCGGAGCTCACAGTTGGCAAAGCTCTTGCCCAGTTCCTCTGCTACGGTTGGA
TGACACTCTTTGCCATACATGTTTAGGGTGTGATACAAGAAACCGCAATGGCTGACAATA
GCTATCTCTTTCTCTTCTCTGGTCCATAACCAGTCAAACAGATTCATGCCCCTGGCAGCA
ACAGACTCATTTGCTTCTATGACATCGGGTCCCCAAAGAACATCTTCATCATTCT

Homology of Contig U35_44225 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01230.2	276	5e-55	protein\|phosphoglycerate mutase, putative, expressed
Brachypodium v1_2	Bradi5g02400.3	340	1e-63
Arabidopsis v10	None