barSeed - Barley Seed Development Database

Probe CUST_18376_PI390587928

Source Contig U35_20292

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18376_PI390587928	Hv_44K_v2	ATATGAATATCACATGCCCTGTTCGATTGGATTTGCAACTGGCGGGAGGACTTTCTTTTT	792	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11875.2	1753	2e-24	633 - 692	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.4	888	2e-24	591 - 650	100	60 / 60	plus	ABC16291
MLOC	MLOC_11875.1	2178	2e-24	1058 - 1117	100	60 / 60	plus	ABC11619 ABC16291
MLOC	MLOC_11875.3	1792	2e-24	598 - 657	100	60 / 60	plus	ABC11619 ABC16291
JLOC1	JLOC1_7917.2	1646	8e-25	585 - 644	100	60 / 60	plus
JLOC1	JLOC1_7917.1	1706	8e-25	649 - 708	100	60 / 60	plus
Harvest21	ABC12529	891	3e-25	793 - 852	100	60 / 60	plus
Harvest35	U35_20292	891	3e-25	793 - 852	100	60 / 60	plus

Contig Sequence (891 bp)

>U35_20292 891 Hv_44K_v2
GCGAGAGACCGCCCCTCCCCTCCCACGCGGCCCCTCCCTTCTTCCCCCCCGCCCAGGAGC
TCCGGCAGGCGCCCGCCGCGGCGGAAGCGCCAGGGGGGAAGGGGACGCCGCCGCGGCAAT
GGCGGCAATGGAGGCCGCCGCCGACGCGATGCTCGCCGCCGCCAGCCGCGCCTTCTGCAG
CTCCGTCGCCGTCTTCTTCCAGATCCAGGGGTGCTGTATCTGCTTACTACTTGCTTTTGG
TTGGGCTGTTGCTTCATTGGTCAGAAAAAAGGAAATTCGTAAGATGAGGCGCAAAATGGC
ATCTGGACATAGTTTTGCCTTTCTTTGTGATGACGTAGATGAGCTTGAGCACTCCGTGCA
GCAGAAATTACCTATGGTCTCTGTAGTCATGCCTTTGAAGGGCTTTGGGGAGCACAATTT
GCAAAATTGGAGAACTCAGATTACTTCTCTTTATGGGGGACCATTGGAATTCTTGTTTGT
AGTAGAAAGCAAAGATGATCCAGCTTATCGTGCCGTCTCCCGATTGATTGTAGAGTACAA
GGACAAATTGGACGCAAAGGTGGTTGTAGCTGGGTTTTCAACAACTTGTAGCCAGAAAAT
TCATAATCAGTTAATTGGTGTTGAAAAGATGCACAAGGACAGCAAATATGTTCTATTTCT
GGACGATGATGTCAGACTGCATCCTGGGACAGTCGGAGCTCTCACAAAAGAAATGGAGAA
GAACCCTGAGATATTTATCCAAACGGGATACCCTCTTGACTTGCCTTCTGGCAGCTTGGG
AAGCTATTGCATATATGAATATCACATGCCCTGTTCGATTGGATTTGCAACTGGCGGGAG
GACTTTCTTTTTGTGGGGTGGCTGTATGATGATGCATGCTGATGATTTCCG

Homology of Contig U35_20292 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g67870.1	518	9e-148	protein\|expressed protein
Brachypodium v1_2	Bradi2g58060.1	518	2e-152
Arabidopsis v10	AT2G19880.2	520	8e-133	Nucleotide-diphospho-sugar transferases superfamily protein \| chr2:8581578-8585118 FORWARD LENGTH=520