barSeed
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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_18309_PI390587928Hv_44K_v2GTGGCTTCGACTTTGGAAAATCAGAGTGACTTAATCGTGTCACATATAGAGCACGTTTTC591GeneList: red
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2591.4631.1930.9010.3150.344
Raw 156.138287.541202.731244.46428.82734.732



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36750415372e-241476 - 153510060 / 60plus ABC07455 ABC07456 ABC07457
MLOCMLOC_33676.165212e-245517 - 557610060 / 60minus ABC07456 ABC07457 ABC17596
JLOC1JLOC1_21782.260508e-25541 - 60010060 / 60plus
Harvest21ABC074576543e-25592 - 65110060 / 60plusABC07457
Harvest35U35_33136543e-25592 - 65110060 / 60plus



Contig Sequence (654 bp)

>U35_3313 654 Hv_44K_v2
AGAAGAGTATGATTTCGATGGCACAAGAAATTCAACAAATGCGGGCCGAATTAGCTAGTT
TTGATGGCAGACCATGGGGCACAGTCTTTCTGGATACGTGGAGGTTCTTCAGTCCATATG
CTGGACCCTTCTCGAGTTTGCCAGTCTTTCTGGGTGGAGCACATGGGATGAAGCTGGGCA
GTCCTGAAGCTACCTTTCCTACTCAATATGGAGATAAATACAATATACACGCGGGAGTTT
CTGAGAAAGGTCCTTCACACCCTCCTGAATCTTCGTGGGGCACATATGATAAGAACCGTT
TCCAGTACCGCTAAGAGCCCAGCTGCTACATTCCTGGGAGAAAGAATCACCTTCTAGGTG
TTAATTATCATATCACATGGTTTAGAATATCTTATCTACCTACTTGTTTGTGTTCTAGAC
TTCTTTATGCTTTGAATAATTATACTTTCTGTGTTAGTTGATAATATTTGTGCTGGCAGT
ATCCTGTTACTATTTACATATTGGCTCCAGATTTCTGCATGTTACTAGGATATCCAGGTT
TCCTTGTTAGATTGATCTATGACTATGACCATGACTAGCAATTATTTGAACGTGGCTTCG
ACTTTGGAAAATCAGAGTGACTTAATCGTGTCACATATAGAGCACGTTTTCTGA



Homology of Contig U35_3313 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None