barSeed - Barley Seed Development Database

Probe CUST_18298_PI390587928

Source Contig U35_3324

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18298_PI390587928	Hv_44K_v2	ATTTGGAGAGTCCTGTTCTGACCTTGAGCTGGAAAATGGACTAACTGATATTGTAAAAAA	1841	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59651.1	1124	9e-22	352 - 406	100	55 / 55	minus	ABC08641
JLOC1	JLOC1_38833.1	1170	5e-22	167 - 221	100	55 / 55	minus
Harvest35	U35_3324	1912	3e-25	1842 - 1901	100	60 / 60	plus

Contig Sequence (1912 bp)

>U35_3324 1912 Hv_44K_v2
CACACCGGAACCGCATTCGCAGCCCGCTTTCGTCGCCGCCATCACCACACCTCCTCAACC
TCCTCTCATGGTGATTGCCCCCCGAGCCGCACGCCCCAAGCACCCCTAACCCTAGATCCC
GCCACCACTCACCCCCGCACGCGCACTCTCACTCCCCCACTCTGCCTGCCTGTCACCATG
GAGGCCGGGAGCAGCAAGGCCAGGCTGGCTGTGGCGTGCGCGATCGGCGGGATCGTGCTG
GGCGCGGCCGTCGTGGCGCTCCACGTCGCCGGGCCCGTGGCCGTCCCGGGGCTTCCCCCG
CTCGACGCGCTGCGGCGCCGGTTCCGCCGCCGCCGCCGCCCCGTGCGCGTCTACATGGAC
GGCTGCTTCGACATGATGCACTACGGCCACTGCAACGCGCTGCGCCAGGCGCGCGCGCTC
GGCGACCAGCTCATCGTCGGCGTCGTCAGCGACGACGAGATCACCGCCAACAAGGGGCCG
CCCGTCACGCCGCTCAACGAGAGAATGGTGATGGTGGGTGCAGTGAAATGGGTGGATGAT
GTTATTCCAGATGCGCCATATGCCATAACTGAAGACTTCATGAACAAGCTATTCACCGAG
TATAATATAGATTACATCATCCATGGCGACGATCCTTGCCTGCTCCCAGATGGCACCGAC
GCATATGCCCTTGCCAAAAATGCTGGCAGATATAAGCAGATTAAAAGAACTGAGGGAGTG
TCAACAACAGACATTGTCGGAAGAATGCTTCTTTGTGTTAGAGAGAGATCAGTTTCTGAT
AGGCACAACCACTCTTCACTACAGAGGCAGTTCAGTTCTGGGCATGGTCAGAAGATTGAC
GATAGTGGGTCTGGAAGTGGAACTAGAATATCTCATTTTCTTCCTACATCTAGGCGGATA
GTTCAGTTCTCAAATAGCAGGGGTCCAGGACCAGATTCTCGGATAGTTTACATCGATGGT
GCATTTGATCTGTTCCATGCTGGTCATGTTGAGATATTGCGACTTGCTCGAGGGCTTGGA
GATTTCTTGCTTGTTGGTATTCACACGGATCAGACAATAAGTTCTACACGAGGACCACAT
CGCCCAATCATGAATCTTCATGAGCGAAGTTTGAGTGTCCTAGCCTGCCGTTATGTTGAT
GAAGTAATAATTGGTGCTCCATGGGACATTTCAAAAGACATGATTACAACATTTAATATT
TCATTAGTCGTTCAAGGAACAATTGCTGAGAACATGGATTTTGCGAAGGATGAGTCACAT
CCATACGCTGTCCCAATGGATATGGGCATTTTCCACAGATTGGAGAGTCCTTTGGATATC
ACTACTAGCACTATTATAAGGAGGATAGTTTCTAACCATGAAGCCTACCAGAAGCGGAAT
GAGAAGAAGGAAGCCAGTGAGAAGAAGTACTACGAGAGTAAAAACTTCGTCAATGGAGAG
TAGTTTGTGAACATACGTTTTGAGATACTAACACCCCGTCACAAATGCAACCAACCATCA
GGTGTTCCACATGTTTATTGTTTCATGTTATCTTTGTCATGTTGATGATACAGGCTTAGG
TAGCTTGTGATGAAACCTCGCCTAGTGAGATCCAGGCAGTAGTGGTGATTTTAGGTGAGG
ATGCTGGAGGGGGAAGGTGTTTCCTCCATTCACTTCCAGTCTCCATCTTCCCTGTCTAGG
GCCCCTGTTTATGGTCCTTCGCTGCTCAAGTTTTAGTTGTGACCTATAGTTTCATAACTC
TGGTACAGTATGAATGTTAGGTTGAATAACTACTTGCAGTTGATGCTTTATTTATGCCTC
CTGATATATGCGGGCACTGTGTGCGAGTCCTTTTCTAGTACATTTGGAGAGTCCTGTTCT
GACCTTGAGCTGGAAAATGGACTAACTGATATTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3324 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os12g02820.1	425	protein\|cytidylyltransferase domain containing protein, expressed
Brachypodium v1_2	Bradi4g44130.1	428
Arabidopsis v10	AT2G38670.1	421	\| Symbols: PECT1 \| phosphorylethanolamine cytidylyltransferase 1 \| chr2:16168979-16171680 FORWARD LENGTH=421