barSeed - Barley Seed Development Database

Probe CUST_18276_PI390587928

Source Contig U35_3346

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18276_PI390587928	Hv_44K_v2	CTGTTGATGTGGTAAATTTACCAAACATGATCATGATTTTCATTCAATGCTTGAGACGGA	1799	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.337	0.207	0.529	1.464	1.355	1.732
Raw	70.123	13.847	34.123	142.636	47.997	66.452

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_51720.1	6425	2e-24	4500 - 4559	100	60 / 60	plus	ABC07577 ABC11665
MLOC	MLOC_51719.4	1813	2e-24	1721 - 1780	100	60 / 60	plus	ABC07577
MLOC	MLOC_51719.1	2143	2e-24	2051 - 2110	100	60 / 60	plus	ABC07577
JLOC1	JLOC1_33060.2	1917	8e-25	1703 - 1762	100	60 / 60	plus
JLOC1	JLOC1_33060.1	2230	8e-25	2016 - 2075	100	60 / 60	plus
Harvest21	ABC07577	1719	3e-25	1644 - 1703	100	60 / 60	plus	ABC07577
Harvest35	U35_3346	1875	3e-25	1800 - 1859	100	60 / 60	plus

Contig Sequence (1875 bp)

>U35_3346 1875 Hv_44K_v2
GCTCTCACCTGCTACTGCTAGCTAGCCCCTCCGGCTCAACGGAAGCTAGCGATCGCCATA
GCCTCTGCGACTTGCCAAAGCTAGCACCCGCGCTAGAACAAGAAGAAGAAGCAGAACCAG
AGGCGCAAAAGGCTTTGCGTGTGGCCTCAAGGAACCCCGAAAAGGCCGAGAAGGAAACAA
GATAAAAGGTAATTTGAGCAGGGGGCAACGATGGGTTGCGGCTTGTCGACGCCGGACAAC
GAAGGCGGCGGCACGCGGAGGAAACAGGGGAGCGTCGGCGACGTGGTCGTCTTCCTCCCG
GGGCTCCGGACGCCGACGGGCGTGGACCTGTCCCAGCCGCTCGCCGGGCGCCTGGAAAAG
GGCGCCGTGGAGAGGCTGTCGGCGCTGAGAGCGCGCGTCGTCGACATGACAATGCAAGAA
TCGGCGTCGGCCCTCAAACCGAGGCGGAAGGCCGCCGCACGGCACGGATCTAGCACCGCT
AACCTCCTGCAGGCGCTGGAGGACTACCTCCCGCTTCTGCTAGGATTGGTGAAAGATGGT
GGTGAGTTGAGGAACAGCGTGGAGTTTGTGTGGACTAACCAAGAGGACAAGGCAGAGGAG
ACGGCCATGGCGGATGCGTGGTACGAGGTGCTGTCCGTGCTGCATTTGATGGCCATGGTC
TGCTTGCTGCAGGCCAACTCCCTTCTCCTTCCAAGGGCTTACGGCGACGGTTACGGGCCA
CGGGTCTCTGAAGAGAGCAGACGTGCCACTGTCGACGTTTTCTTGAAAGCGTCTGGCTAC
TTGGACTGCGCGATTCGACAAGTGCTCCCACAGATACCAACAGAACTAAGGAGACAACTT
CCAGTTGACCTGGCTGAAGGCAACCTCAAAGCTCTTAGCCTGCAAGCTCTGGGTCAGGGT
GTTGACATGCAGCTTGGGCTGGCAATCGATAGCCCAAAGGCCACACTAGCTGTAAAAAGG
CGCTTAGCTTGTGAGATGGTCAAATATTGGCACCAGGTTCAGGAGAGCATTCCAGATCTT
CCCGTGTCTGACGGATGGGGGAAAAAACATCTGCTATTTGTCAAGTGGAAGTACGTCGAA
GCAAAGTCTGCAGCATACTACTTCCATGGCTTGATCCTCGACGAAGGAAACAGCGAGAAA
TCTCACGGAATGGCAATAGCAGCATTGGAAGCTTCAGAGGAATTTCTGAAAGAAAGCAAA
AGGGCCTCTGAAGCCTTCCACGCAACTCCTCCAACATCTAGGAGCCCCACTCCATTCGGA
ACAGCCAAGTATCTGTTTGACAAGATCCCGAAAGAGGCTTCAAGCAAGGTCCGGATCAAC
CAGGATCTGTATACTCCAGAAAGGATCATTGGAGCACCACCCCCATTGCCGGATTTCTCG
TTGGCACTAACACCTGAAGACTACGATCTTCCTCCATTAGACCCACTTTGGAACAAAGAA
GACGGCCACCAGTAAGTGTATATTCAGCATTCAGCAAGAGTGCCTTCTGATGGGAAGGCT
CTGGCACTACTGAGAAAGCAACGACCAGGATTCTGCCATGCGGAGGCCGAACACGGCGCA
AACGAAGTGTACAAAGATATGTTGCAACAAAAAATTGGTGTCGACAAATTGGAAGCAAAT
TTTAGAAAGGCCTGAAGATATCTCAAGAGCATTTTTACAGTTAAATCTTCTCTGACAATG
GGAACGCATTGTCAAAAGCTTTCCAACAATTCCTGTAAAAATTAAATTTGCAATGAGCGC
CATGGTTCCTTTTTCTTAGGATTTTCTGGCCATGGCTTAGTTTTGGGGCCATTCTGAGCC
TGTTGATGTGGTAAATTTACCAAACATGATCATGATTTTCATTCAATGCTTGAGACGGAA
AAAAAAAAAAAAAAA

Homology of Contig U35_3346 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g44530.4	414	0.0	protein\|expressed protein
Brachypodium v1_2	Bradi5g16320.1	413	0.0
Arabidopsis v10	AT1G73390.1	419	9e-179	Endosomal targeting BRO1-like domain-containing protein \| chr1:27591079-27594148 REVERSE LENGTH=419