barSeed - Barley Seed Development Database

Probe CUST_18227_PI390587928

Source Contig U35_19254

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18227_PI390587928	Hv_44K_v2	AGATAAACTGAATGGTGAGGGCTGCGTGCAGAAATTTTGGGATAATTGCTGATTAAAAAA	1719	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_10027.1	1088	3e-22	57 - 112	100	56 / 56	minus	ABC11943
JLOC1	JLOC1_6534.4	1647	1e-22	1527 - 1582	100	56 / 56	plus
JLOC1	JLOC1_6534.3	1631	1e-22	1511 - 1566	100	56 / 56	plus
JLOC1	JLOC1_6534.2	1579	1e-22	1459 - 1514	100	56 / 56	plus
JLOC1	JLOC1_6534.1	1515	1e-22	1395 - 1450	100	56 / 56	plus
Harvest35	U35_19254	1790	3e-25	1720 - 1779	100	60 / 60	plus

Contig Sequence (1790 bp)

>U35_19254 1790 Hv_44K_v2
CATCTTGGGCAGCCTTCCTCTCCGACTCGTCGCAACCGCAAATCGCAAGGACAGCAGGAG
CTAACACGACGAGGCCACGCGACCACCACCCACCGGTCTAGCGCCTCCTCATCGTCGCCG
TTCCATCCCACCCGTTGCCTTGGCTCCGCCTGAAATCGCCATGACGAAGAAGCAGCGCAG
GGAGGCTGGCGCCCGGCAGCGGCTGCGGCCGCCGCCGCTGCTGCAGGCGCGCGACGAGCG
CTCCGTCTCATGCACCACCTTCAACATTCTCGCGCCGATCTACAAGCGCATGGATTCTGA
GAATGGCAGGGAGAGCCAGAACAGGGCCAACTGGTTTAGCAGGAATGAGAAAATCATCGA
CCGCCTCCTCGGGGATCGCTCCTCCATCATCTGCCTCCAGGAGGTGTGGTTGGGGAATGA
TGAGCTAGTAAACATGTACGAGAAGCGACTCGGTGATGCGAATTATAAGCTGTTCAAGCT
CGCCCGCACAAATAACCGAGGAGATGGTCTTCTGACTGCTGTACATATGAATTACTTCTG
TGTCTTGAACCACCGGGAGCTTCTGTTTAATGATTTTGGAGATCGAGTTGCTCAGCTATT
GCATGTTGAGTCAGTCATACCTTTCTTGCAAAATCGAAGCAGCAGCTATGTCCAGCAGCA
GAGCCTCATCGTGAACACTCATTTGGTGTTTCCCCATGATCACAGCCTTTCAATAGTTCG
ACTGAAGCAGGTATATAAGATCCTTCAGTATGTAGAAGCTTACCAGGAAGAGCATAAACT
TGGTCCAATGCCTATCATCTTATGTGGTGATTGGAATGGAAGTAAGCGCGGCCAAGTTTA
CAAATTTCTTCGTTCACAAGGATTTGTTTCATCATATGACACTGCTCATCAGTACAGTGA
CAGCGAAGAAGATGCACACAAGTGGGTGAGTCATCGGAATCATAGAGGGAACATCTGTGG
AGTTGATTTTATATGGCTTCTGAATCCAGATAAGTGCAGGAAACCCCTGAAAACTAGCTG
GAATGAAGCTGTCTTTGGTATTATCAAGTATCTTCTTCTCCAAGTTGCATCCCTTCCGGA
GGAGAATGCATTTGCACTCCTCAAAGCTGACAGTTCAGATGATTGTATCACATACTCAAG
CTTCTGCCAGGCACTTTGTCAGTTAGGAATGGTCCACCCTGATCGTGTAAATTCTAAAGA
AATGGAAGATCTATGGAGTGAAGTTGACCATGATGGGAATGGTGCTGTTGACTACAAAGA
ATTTCAGCGGTGTATCTGGAGCCCAAAATGCTACAACCAAGAGGAGGATGATACTGAAAT
CGAGGTCGCTGAAGAAAGCATTGTCACATTTGAGCCGAGCGACGAAACCTTTGGCTTTAC
CGTGAAGGAAGCTGTTCTGTTCCCCCCAGAAGTTGAGAAGGGCATGTGGCCTGAGAACTA
CAGCCTCTCAGATCACGCGCCCCTTACTGTGGTGTTCTCCCCTGTAAGAATGCCTTGCTC
TCCACGAACTCCTCGGCACCCGTAGCTATCAAACGCCAGTACAGATGCAAAGGTTGTACA
GTTGTAGGTATACGGTGAGATATACACCAGAGAAGTTTTATTTTAGGTACCGGAAATAGT
AAGAACAGGCGACAGACATGATGTCTATGCAAACAGTTTGTATCCAAACCTGTCTCCTCA
TGTTCATAAATGTAAATTTTGCTCTCTTTTCTTGGTGTAAGATAAACTGAATGGTGAGGG
CTGCGTGCAGAAATTTTGGGATAATTGCTGATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_19254 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os10g13550.1	472	protein\|endonuclease/exonuclease/phosphatase family domain containing protein, expressed
Brachypodium v1_2	Bradi3g23040.1	463
Arabidopsis v10	AT5G54130.2	436	Calcium-binding endonuclease/exonuclease/phosphatase family \| chr5:21962900-21965279 FORWARD LENGTH=436