barSeed - Barley Seed Development Database

Probe ABC11943

Source Contig ABC11943

barSeed

Links

Affymetrix Source Sequence (1767 bp)

>ABC11943 1767
CATCTTGGGCAGCCTTCCTCTCCGACTCGTCGCAACCGCAAATCGCAAGGACAGCAGGAG
CTAACACGACGAGGCCACGCGACCACCACCCACCGGTCTAGCGCCTCCTCATCGTCGCCG
TTCCATCCCACCCGTTGCCTTGGCTCCGCCTGAAATCGCCATGACGAAGAAGCAGCGCAG
GGAGGCTGGCGCCCGGCAGCGGCTGCGGCCGCCGCCGCTGCTGCAGGCGCGCGACGAGCG
CTCCGTCTCATGCACCACCTTCAACATTCTCGCGCCGATCTACAAGCGCATGGATTCTGA
GAATGGCAGGGAGAGCCAGAACAGGGCCAACTGGTTTAGCAGGAATGAGAAAATCATCGA
CCGCCTCCTCGGGGATCGCTCCTCCATCATCTGCCTCCAGGAGGTGTGGTTGGGGAATGA
TGAGCTAGTAAACATGTACGAGAAGCGACTCGGTGATGCGAATTATAAGCTGTTCAAGCT
CGCCCGCACAAATAACCGAGGAGATGGTCTTCTGACTGCTGTACATATGAATTACTTCTG
TGTCTTGAACCACCGGGAGCTTCTGTTTAATGATTTTGGAGATCGAGTTGCTCAGCTATT
GCATGTTGAGTCAGTCATACCTTTCTTGCAAAATCGAAGCAGCAGCTATGTCCAGCAGCA
GAGCCTCATCGTGAACACTCATTTGGTGTTTCCCCATGATCACAGCCTTTCAATAGTTCG
ACTGAAGCAGGTATATAAGATCCTTCAGTATGTAGAAGCTTACCAGGAAGAGCATAAACT
TGGTCCAATGCCTATCATCTTATGTGGTGATTGGAATGGAAGTAAGCGCGGCCAAGTTTA
CAAATTTCTTCGTTCACAAGGATTTGTTTCATCATATGACACTGCTCATCAGTACAGTGA
CAGCGAAGAAGATGCACACAAGTGGGTGAGTCATCGGAATCATAGAGGGAACATCTGTGG
AGTTGATTTTATATGGCTTCTGAATCCAGATAAGTGCAGGAAACCCCTGAAAACTAGCTG
GAATGAAGCTGTCTTTGGTATTATCAAGTATCTTCTTCTCCAAGTTGCATCCCTTCCGGA
GGAGAATGCATTTGCACTCCTCAAAGCTGACAGTTCAGATGATTGTATCACATACTCAAG
CTTCTGCCAGGCACTTTGTCAGTTAGGAATGGTCCACCCTGATCGTGTAAATTCTAAAGA
AATGGAAGATCTATGGAGTGAAGTTGACCATGATGGGAATGGTGCTGTTGACTACAAAGA
ATTTCAGCGGTGTATCTGGAGCCCAAAATGCTACAACCAAGAGGAGGATGATACTGAAAT
CGAGGTCGCTGAAGAAAGCATTGTCACATTTGAGCCGAGCGACGAAACCTTTGGCTTTAC
CGTGAAGGAAGCTGTTCTGTTCCCCCCAGAAGTTGAGAAGGGCATGTGGCCTGAGAACTA
CAGCCTCTCAGATCACGCGCCCCTTACTGTGGTGTTCTCCCCTGTAAGAATGCCTTGCTC
TCCACGAACTCCTCGGCACCCGTAGCTATCAAACGCCAGTACAGATGCAAAGGTTGTACA
GTTGTAGGTATACGGTGAGATATACACCAGAGAAGTTTTATTTTAGGTACCGGAAATAGT
AAGAACAGGCGACAGACATGATGTCTATGCAAACAGTTTGTATCCAAACCTGTCTCCTCA
TGTTCATAAATGTAAATTTTGCTCTCTTTTCTTGGTGTAAGATAAACTGAATGGTGAGGG
CTGCGTGCAGAAATTTTGGGATAATTG

Probe Sequence's BLAST hits in Barley MLOC transcripts

Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Agilent Probes on MLOCs	Affymetrix Probes on MLOCs
AK364475	1782	0.0	16 - 1781	99	1766 / 1767	None	ABC11943
MLOC_10027.2	1556	0.0	1 - 1552	100	1552 / 1552	None	ABC11943
MLOC_10027.3	1572	0.0	1 - 1568	99	1552 / 1568	None	ABC11943
MLOC_10027.5	1243	0.0	1 - 1231	99	1215 / 1231	None	ABC11943
MLOC_10027.4	1604	0.0	1015 - 1604	99	589 / 590	None	ABC11943
MLOC_10027.1	1088	0.0	65 - 566	100	502 / 502	CUST_18227_PI390587928	ABC11943
MLOC_10027.6	514	0.0	1 - 502	100	502 / 502	None	ABC11943
MLOC_41277.1	513	1e-110	1 - 218	100	218 / 218	None	ABC03602 ABC11943
MLOC_41277.2	208	2e-87	1 - 187	98	184 / 187	None	ABC11943