barSeed - Barley Seed Development Database

Probe CUST_18143_PI390587928

Source Contig U35_5956

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18143_PI390587928	Hv_44K_v2	GAAAAGATATTATGGACAGGATAAATAAATGGATTGCTGCCTGTGATGAAGAAGCTTGGC	1439	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22184.5	2319	2e-24	799 - 858	100	60 / 60	minus	ABC15227 ABC33324
MLOC	MLOC_22184.4	1095	2e-24	802 - 861	100	60 / 60	minus	ABC15227 ABC33324
MLOC	MLOC_22184.2	2632	2e-24	940 - 999	100	60 / 60	minus	ABC15227 ABC33324
MLOC	MLOC_22184.3	2727	2e-24	914 - 973	100	60 / 60	minus	ABC15227 ABC33324
MLOC	MLOC_22184.6	2015	2e-24	782 - 841	100	60 / 60	minus	ABC15227 ABC33324
MLOC	MLOC_22184.1	6194	2e-24	4389 - 4448	100	60 / 60	minus	ABC12425 ABC15227 ABC33324 ABC38132
JLOC1	JLOC1_15379.3	4358	8e-25	1628 - 1687	100	60 / 60	plus
JLOC1	JLOC1_15379.2	3871	8e-25	1141 - 1200	100	60 / 60	plus
JLOC1	JLOC1_15379.1	3850	8e-25	1120 - 1179	100	60 / 60	plus
Harvest35	U35_5956	1559	3e-25	1440 - 1499	100	60 / 60	plus

Contig Sequence (1559 bp)

>U35_5956 1559 Hv_44K_v2
AATTCTCGTGCACCCTCGCCCCCTCCGCTCCACTTCTCTTCTTCCTTTGATCCCGTTCCC
AGGGGGCTGCTGGCATTTGGCGCGCCTGCTTTTTCCTCTTCTTTTCCTCATCCCAAGTAG
AGGAGGAGGACGAGCCTACATAAAAAAGCTCAGGCGCCGCCTCGGCTAATGGCCTAGCCG
CTGCTCAGTGCGGCGTAGCTCGACGGCCGGCCTAGGGGTGGATAAGTGTCTTTGAGACTT
TGCGTCGCCTTGTCCCTTCACCTCCTTGCCTCTTCTCTTCTTTGAGCTGCTCCTCCCTCT
GCTTGGTTGCTTCCGTTCCATGGTGGGCATGGAGGGTACCGGCTGCGGCGCTTTGCTCAG
AGAGCTTCAGCAAATCTGGACGGAGGTAGGGGAAAGCGAGGGTGAGAAGAGCAAGGTCTT
GTCAGAGATAGAAAGGGAGTGCTTGGAGGTGTACCGCAGGAAGGTGGACGATGCCAATCG
GACCAGGGTCCAGCTGCACCAGTCTGTGGCCACCAAGGAAGCCGAGGTTGCCTTGTTAAT
GGCTACTCTAGGGGAGCACAAGCTGTATCTCAAGAAAGACAAGGGCTATGTGTCGCTCAA
GGAACAACTCGCTGCTGTCGTTCCTGTGCTCGACGACCTGAAATGCAAGAAAGAAGAAAG
GATCAAGCAGTATTACGATATTCGATCACAGATTGAGAAGATACGCTCCGAGTTAAGTGA
GCAGAATGATCAGGGTGATAACGTAAACAGTCTAGCTGACGATGAACATGATTTGTCGAC
AAGGAACCTTAATAGCTACCAAGCGCAGCTTCGTGCTCTTCAGAAAGATAAGTCTGACAG
ACTTCACAAAGTTCTGAAATATGTAAATGAAGTGCATTCTTTATGTGGAGTCCTTGGAAT
TGATTTCGCAAAGACCGTAAACGGAATTCATCCCAGTCTACATCAGAATGGCGTTGAGCA
GTCCAGAAACATCAGCAATGGCACACTGGAAGGCCTTGCTAGCACAATATCAAATCTTAA
AGCAGAGAGAAAATCTAGAATCGATAAGATGAGAGACACAATGGAATCATTATGTCACCT
CTGGAAGTTAATGGACTCTTCTGAAGAGGAGAAGAGACAATTCAGCAAAGTAATCAGCAT
TCTCATATCACCAGAAGAGGGAATCACATCAGCTGGTGTTCTTTCCCAGGAAACAATCGA
AAAGATGGAAGCTGAGGTTGAGAGGTTAACAGAACTTAAAACCAACAGATTGAAAGAAAT
TGTCACGAAGAGAAGGACAGAACTAGAAGATATATGCAAGAAGGCACACATAGAACCTGA
TCTCAGCACAGCCCCTGAGCAAACTAACGCTCTCATCGATTCTGGCACTATTGATCCTTC
TGAGCTCCTGGCGAATATCGAGTCACAAATATTGAAAGCAAAAGAAGAGTCACTAAGTCG
AAAAGATATTATGGACAGGATAAATAAATGGATTGCTGCCTGTGATGAAGAAGCTTGGCT
TGAAGAATATAACCAGGACTCAAAGAGGTATAGTTCTGGAAGGGGTGCTCATGTAAACC

Homology of Contig U35_5956 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g27700.2	596	0.0	protein\|microtubule associated protein, putative, expressed
Brachypodium v1_2	Bradi4g31800.1	596	0.0
Arabidopsis v10	AT2G01910.1	608	2e-161	\| Symbols: ATMAP65-6, MAP65-6 \| Microtubule associated protein (MAP65/ASE1) family protein \| chr2:417191-420182 FORWARD LENGTH=608