barSeed - Barley Seed Development Database

Probe CUST_18124_PI390587928

Source Contig U35_5975

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18124_PI390587928	Hv_44K_v2	CCATACATGCTAAGCGCTAGCTGTTTTGTTGAGGTGTAAATCTTCAGCAATTTTAAATGC	546	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK357703	619	2e-24	547 - 606	100	60 / 60	plus	ABC12517 ABC16647 ABC26243
MLOC	MLOC_63759.1	487	2e-24	256 - 315	100	60 / 60	plus	ABC12517 ABC26243
MLOC	AK252842.1	534	7e-23	476 - 532	100	57 / 57	plus	ABC12517 ABC16647 ABC26243
JLOC1	JLOC1_41802.1	983	8e-25	797 - 856	100	60 / 60	plus
Harvest21	ABC52510	582	3e-25	520 - 579	100	60 / 60	plus
Harvest35	U35_5975	609	3e-25	547 - 606	100	60 / 60	plus

Contig Sequence (609 bp)

>U35_5975 609 Hv_44K_v2
CCACGACGTAGCAGTCGTTCACACACCGGTCCAGAGGCCGCCGCCGCCGCCGCCGCCGCC
GTCGGCCGCTACGAGAACCCCAGAGTAAAGGAAGATGCCTTCACTTCAGAAAGCTTTACC
TCCAGAACTTGCCGATAATGCGCTTAGATTATACCGCGAGTGCTTAAGGAGGGCTAAGTT
CATCGGTAGTCAGCAACATAATACAGGGCTTCTTGTTTCCATGGTGAGGGAACAGTTCAA
GAAAAACATGCATGAAACTGATCCAGAGAAGATACAGAAAATGAAGGATGATGCGGCACG
GGGCCTTATCAATCACATAATATATGAATCCGAGAAGATGACGGGGCGTAAATTCTCAGG
TTAAGAAAGTTGAAAGTAGACTATCGGCATATCCTGTATGAATTGAACAGTGGCTTGATC
CTATGGCTGTTGAATTGTTTTTCTCTTCCGACACAAGGACCATCTAATGCTTTTATTTGT
TGTTGACTTAATAAAGCAGTGATTTTTCATCAAAAAAAAAAAACTGTGCTTCTGGATGTA
ATCGACCCATACATGCTAAGCGCTAGCTGTTTTGTTGAGGTGTAAATCTTCAGCAATTTT
AAATGCTCC

Homology of Contig U35_5975 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g37850.1	143	4e-53	protein\|expressed protein
Brachypodium v1_2	Bradi4g04407.1	141	9e-56
Arabidopsis v10	None