barSeed - Barley Seed Development Database

Probe CUST_18112_PI390587928

Source Contig U35_5988

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18112_PI390587928	Hv_44K_v2	AAATGGCTTGTGAAGGTCTTGGACACTGCAAAAATGGTTGCAGTCCTCATAGGTTGTCCT	1167	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_30879.5	1036	2e-24	577 - 636	100	60 / 60	plus	ABC11931
MLOC	MLOC_30879.4	1326	2e-24	866 - 925	100	60 / 60	plus	ABC11931
JLOC1	JLOC1_20370.6	577	8e-25	359 - 418	100	60 / 60	plus
JLOC1	JLOC1_20370.3	1086	8e-25	868 - 927	100	60 / 60	plus
JLOC1	JLOC1_20370.2	800	8e-25	582 - 641	100	60 / 60	plus
Harvest21	ABC11931	584	1e-23	300 - 359	98	59 / 60	minus	ABC11931
Harvest35	U35_5988	1526	3e-25	1168 - 1227	100	60 / 60	plus

Contig Sequence (1526 bp)

>U35_5988 1526 Hv_44K_v2
GATCCCCTTTCCCTCGCCGCCGCCACCACCAACGCCGACCTATTCCGGTGAGCTCCGACG
ACGGGAAGCACTCCCTCGAGCTCCACGCCTCCTTCCGCTCCGTCTACAATCGGCGCTCCC
GCCCTCCATCGTCCCCCGTGGTAGCTAGGGTTTCGGCCACCATTTCATCTCCGGCGACGG
CGAGGCCAACGGGCGGTGGATCCAGCATCGACGTGTCCCAGATAACGGTGACGGGGATGG
GACGGCGATAGCCGTGTCCTGCTCGAGGAGGCGGAGGGGTAGGGGCGCGCCCAGCTGGCA
GCCCTGTCCTGCTCGAGGGGGAGGGGCAGGAGGGGTATGCGCCTCAAGTAGCAGCAGCCG
CAGTGTGGGCAGAGGCGATAGGCTACGACCATCAGCACGATGAGGGGGAGGCAGGTTGCT
GCTACTGCCATATGCGGATCATGCTGGTGTTAAGGCTGGGAATCATAATATCGATGGCCT
GGCCATGTTTTTAGGAGTTGAATCGAAGATACTCTGTGTTGTTGCACAGACTGACTCAGA
TCAATGTTCAGAGGTAATATGTTTCTGCCCGTAATTTTCATTGACTGTCAGCATGTTCCT
TTTTTATTCAGTACTCTGTATATCACGGGGGTATGACTATAATAAGGATATATGGCTGAT
GCATTTTGAACTTCTCTGTTCCTTGGGACAGAACAGAGCTGATAAATTATCTATTCTTTT
TGGCTTTAGTAGTACGAACAGAAAACAGGCAGTAATAAACGGAGGGAGTACTATTTTGTT
AATGAAACGGGGTCATTATTACCCATTTTATCCAACACTAATGTGCCCTAAAATTACAGA
TCGATTCATTCATCTCATACCTTTTTGTGAGAGAGTCTGATGGATTTCAGTGAGCTTTGC
CAAGGTTTTATCCTCTGTTCCTTGGTACATTCTTTTACTATACAACAATTGGTGTGATTT
TTTTTGTTTAGCTGTACGTTGTAGGAACACAGAACCTGGTTATTTCATTATATTCGTTGT
CTAATTTATTTTCTACTACGAGGGATCAAGTTCAGTAATTTCTTTTATCTTCTTTCTTCC
TCACAATTTTACATTTACTCACTGAGCAGTAAAGGTCTTGGACCTGAAATTCTTGTAGTA
CTAATTTAACATAATTGTTCTTCGAGAAAATGGCTTGTGAAGGTCTTGGACACTGCAAAA
ATGGTTGCAGTCCTCATAGGTTGTCCTGGCGAACTCCAAGACGACGTCGAAGAAAGACTC
CGGTTGTACGTCTTGCCCATAAGGAGGTTTGGCAGTTAGTTCGTGTTACTATCGATCGAG
GATTTTTAGCAGGAATTACTTGGGTCTGAAAAGCTTCCTGGAAGTGGTGGTGTAGTGTTG
GAGATTAAAATTATGTAGTAGTGCAGTTTCAATGATGTCATGTTACTTGATTTTTATTAA
ATGCTTATGCTTACAACACCTTGTAAATATCCTTGTGATGTTTTGATATTAATTTTGCTT
TTTGAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_5988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None