barSeed - Barley Seed Development Database

Probe CUST_18099_PI390587928

Source Contig U35_2004

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18099_PI390587928	Hv_44K_v2	GAAGAGCTTGTGCATTATGCCTACGTATAATAAAATAAAAGGGCTGTTCATCGCTAAAAA	714	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6855.2	542	3e-22	359 - 414	100	56 / 56	plus	ABC04844
MLOC	AK373549	2356	3e-21	2303 - 2356	100	54 / 54	plus	ABC04844 ABC14532 ABC17612
JLOC1	JLOC1_4492.1	673	1e-22	535 - 590	100	56 / 56	plus
Harvest21	ABC04844	822	3e-25	715 - 774	100	60 / 60	plus	ABC04844
Harvest21	ABC34350	438	1e-23	368 - 427	98	59 / 60	plus
Harvest35	U35_2004	822	3e-25	715 - 774	100	60 / 60	plus

Contig Sequence (822 bp)

>U35_2004 822 Hv_44K_v2
GGTTAGCACCCACATGGGGGAGAACAACCCGCAGTTCCTGGCCGGGGATCATTCGGTGCT
GCAGGTTATCGGCAAGGAGATCGTGGCGCTGGCGCTGGGGCAGAAGAACACGACCGTCGT
GGAGAAGCTGCTGTCGGCGAAGAGCGGGTCGACCATAATGGCGTGCATCTCGTGCGCGGA
GGAGCTGGAGAGGAAGGCGGAGCAGGAGGAACATGAGGGCGGGAAGGGGGAGCGCGAGAG
GGAGCGGGAAGAGGAGGAAGAAGGCGGCGGAGGCCAAGGCGGAGGAGGCGGTGATGATCC
AAGGGAGGAGGAAATACAGCGGAGGAGGGAGGAGGAAGAAGAAGGCGGAGGACGAGGAGA
CGATCCGAGGGAGGAAGAGGAACGGAGGAGGGAGGAGGAAGGAGGCCGTGGCGGAGACGA
CCCGTGGGAAGAGGAGGGAGGCGACTGGGGAGACTCCACCAAGTACCGCGCCGCCATGGC
CACGAACCTGAAGAAGCGCTACCGTGGTCGCAAGGGCTCCGTGTTCCGGAGCGCCTGAAA
ACAAGAACCGTTCCGGTCACCTTGCACGCTCTATGATCTACCCTTTCCCTGCGTACCGCT
GTACTAATAATGGCGGCGATCCTGGTCGCGTGGGTCTGTTGTTCAGTCTACTGTTCTTTT
AGTTTTCTTGCGTCCGTCGTTGCCACTGTGCCTTGCTGTAGCTGGTGTATAGAAGAAGAG
CTTGTGCATTATGCCTACGTATAATAAAATAAAAGGGCTGTTCATCGCTAAAAAAAAAAA
AAAAAACGCGATTTTTAATTCACAAAAAAAAAAAAAAAGGGC

Homology of Contig U35_2004 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None