barSeed - Barley Seed Development Database

Probe CUST_18087_PI390587928

Source Contig U35_2013

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18087_PI390587928	Hv_44K_v2	GTACTTCTGGGAGTATGTACTCTCAGATTCAGTTAAAGTAGTACCATATACACAAATGTA	908	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.126	0.217	0.894	2.203	1.448	1.394
Raw	34.230	92.817	342.375	1293.512	308.305	320.049

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251494.1	885	2e-24	788 - 847	100	60 / 60	plus	ABC05753 ABC05754
MLOC	AK353964	1007	2e-24	910 - 969	100	60 / 60	plus	ABC05753 ABC05754
MLOC	MLOC_71503.1	2297	2e-24	202 - 261	100	60 / 60	minus	ABC05753 ABC05754
JLOC1	JLOC1_47533.1	2198	8e-25	114 - 173	100	60 / 60	minus
JLOC1	JLOC1_47532.1	757	8e-25	537 - 596	100	60 / 60	plus
Harvest21	ABC05754	1009	3e-25	895 - 954	100	60 / 60	plus	ABC05754
Harvest35	U35_2013	1024	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (1024 bp)

>U35_2013 1024 Hv_44K_v2
GCTTCAGGCTCATAGCGGCACCCGCTCCACACCTCACTTTCCTCCCCAGCAGAGCAAGCA
ACCCAGGAAACAAAGAGACAGAGTGAGAGAGAGCAATGGCGTCCATCATCGTGCAGGTGT
CCGCCCTGCTCCTCAACCTCATCGCCTTCGGCCTCGCCGTCGCCGCCGAGCAGCGCCGCA
GCAAGGCCACGGTGACGCCGGATCTGGCCAAGGAGTACGACTACTGCGTCTACGACTCCG
ACGTCGCCACCGGCTACGGCGTCGGCGCGCTCCTCCTCCTCACCGCCGCGCAGGTCGTCG
TCATGCTCGCCAGCCGGTGCTTCTGCTGCGGACGCGGGCTCAAGCCGGGGGGCTCCCGCG
CCTGCGCCCTCATGCTCTTCCTCTTCTCATGGCTGACCTTCCTCGTCGCAGCGGCGTGTT
TGCTGGCAGGATCAGTGCGTAACGCATACCACACCCGGTACAGGGGTATCTTCAACGGCG
ACCCACTCTCTTGCGAGACGCTGCGCAAGGGTGTCTTCGCTGCCGGTGCAGCCTTCACCT
TCTTCACGGCCATCCTCAGCGAGTTCTACTACATCAGCTACTCCAAATCCCGGGATGCCG
CCGGTGGCGCTCCATACGGCGGCTCCACCATCGGCATGGGCACTTACAGTTAAGGAGCTC
GGCGCTGGCATGGGCACTTCAGTTAAGGAGCTCGGCGCTGGAGGTTTACGGGAAGGTTCA
GTCCGTTTCAGGGCGGATCATGCATGTAGTTCGTGGAGTGTGGTGTTCTTGTTAACGTTA
CAGTGGTAGATTACGGTGTAAATGTGTTTGCTGTCTTCACTAGGTTATGTATGAGATTTC
CTGGTTGGGCCTTATACAATTCGGATGATTGGATTGGATTCTGCATAACAAAAAAAAAAT
CATTTTCTGTACTTCTGGGAGTATGTACTCTCAGATTCAGTTAAAGTAGTACCATATACA
CAAATGTATTATACCACTTTATCATTCTCAATATACCTTATTACTTAAAAAAAAAAAAAA
AAAA

Homology of Contig U35_2013 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g27810.1	186	3e-83	protein\|fiber protein Fb34, putative, expressed
Brachypodium v1_2	Bradi1g28490.1	186	7e-96
Arabidopsis v10	None