barSeed - Barley Seed Development Database

Probe CUST_18061_PI390587928

Source Contig U35_15988

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18061_PI390587928	Hv_44K_v2	TGTACTGGTGTCTGTGATTGATTTGATTAGTAGGAGGAGTAGGATAAGTTAGCCAGCCGC	2	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_13479.1	1416	2e-24	236 - 295	100	60 / 60	plus	ABC07362 ABC08966 ABC09216 ABC18504
JLOC1	JLOC1_9133.1	1505	8e-25	315 - 374	100	60 / 60	plus
Harvest21	ABC12991	727	3e-25	3 - 62	100	60 / 60	plus
Harvest35	U35_15988	801	3e-25	3 - 62	100	60 / 60	plus

Contig Sequence (801 bp)

>U35_15988 801 Hv_44K_v2
CTTGTACTGGTGTCTGTGATTGATTTGATTAGTAGGAGGAGTAGGATAAGTTAGCCAGCC
GCGCACCCAACGCACCTGCTCCCTCCTTCCCCAATCCCCACTCATCTTCATCATCATCAT
CAGCAGCAACCCCCACGTCCACAGTCCACACACACCCCAACGCACCCGCCCCTGTTTATC
TCCTCCTCCTCTTCATCATCTTCTTCCTCCTCTGTTCTCTTCTGCTCTGCTCCAGCCTCC
AGAGAGATAGCAACTCATCGCAAGACAAGTAACCGATCGAGGGAGAGAGAGAGGTCAGGC
ATGGACAAGTACGAGCCGGTCCGGGAGATTGGGTCGGGCAACTTCGGGGTGGCCAAGCTG
ATGCGCAACCGGGACACGCGCGAGCTCGTCGCCATGAAGTTCATCGAGCGAGGATACAGG
ATCGACGAGAACGTGTTCCGGGAGATCGTGAACCACCGGTCGCTGCGGCACCCCAACATC
ATCCGCTTCAAGGAGGTGGTGCTCACGCCCACCCACCTCGGCATCGTCATGGAGTACGCC
GCCGGCGGCGAGCTCTTCGAGCGCATCTGCGACGCCGGCCGCTTCCACGAGGACGAGGCG
CGCTACTTCTTCCAGCAGCTCGTCTGCGGCGTCAGCTTCTGCCACGCCATGCAGATCTGC
CACCGCGACCTCAAGCTCGAGAACACCCTCCTCGACGGCAGCCCCGCGCCCCGCCTCAAG
ATCTGCGACTTCGGATACTCAAAGTCGTCGGTGCTTCACTCGCGGCCCAAGTCGACGGTG
GGCACGCCGGCGTACATCGCG

Homology of Contig U35_15988 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g59450.2	224	3e-110	protein\|CAMK_CAMK_like.28 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi5g27430.1	381	2e-115
Arabidopsis v10	AT5G63650.1	360	4e-99	\| Symbols: SNRK2-5, SNRK2.5, SRK2H \| SNF1-related protein kinase 2.5 \| chr5:25481631-25483495 REVERSE LENGTH=360