barSeed - Barley Seed Development Database

Probe CUST_18033_PI390587928

Source Contig U35_15996

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18033_PI390587928	Hv_44K_v2	AACTGTACTGATGGAGTAAGTGCACCCCCATTAATGGTAGAAGGTGCAGAAAACAGTGGA	399	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66130.2	777	2e-24	266 - 325	100	60 / 60	plus	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
MLOC	MLOC_66130.1	873	2e-24	293 - 352	100	60 / 60	plus	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
MLOC	AK365712	1047	7e-23	404 - 463	98	59 / 60	plus	ABC05128 ABC05130 ABC05132 ABC05133 ABC41788
JLOC1	JLOC1_43564.2	831	8e-25	252 - 311	100	60 / 60	plus
JLOC1	JLOC1_43564.1	871	8e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC05129	503	3e-25	400 - 459	100	60 / 60	plus
Harvest21	ABC52041	615	6e-22	379 - 438	97	58 / 60	plus
Harvest35	U35_15996	504	3e-25	400 - 459	100	60 / 60	plus
Harvest35	U35_50038	615	6e-22	379 - 438	97	58 / 60	plus

Contig Sequence (504 bp)

>U35_15996 504 Hv_44K_v2
CGTCTTTGCCCAGGAAAAAACCAGTCAGCGGAAGAGGACACGGCTGACGGCCTCCTCCAC
CATCACCGCCGCCGCCGCCGCACTTCGTGTAGCTCTTCCTCTTCCTCCTCAGAAATGGAG
GCCAGCGCCGCCGCAGCTTTGTATCCCGCGCACCGATGCAAAAACTTATACCTGGTGAGG
CATGCCCAGGGTGTTCACAATGTGGAAGAAAAGAAGGATGTTGTAGACTACACTTTACCT
GAGCTGCTTGATGCTCAACTCACCCCTCTCGGATGGAGCCAAGTTGATTGCCTGCGAGAG
CATGTGACGAAATGTGGACTAGCAAAAAAGATTGAGTTGGTTATTGTTTCCCCTCTAATG
AGGACTATGCAAACTGCAGTGGGGGTCTTTGGTGGTGGGAACTGTACTGATGGAGTAAGT
GCACCCCCATTAATGGTAGAAGGTGCAGAAAACAGTGGACGCCAGCCGATTTCAAGTTTG
AACTGCCCACCATTCCTTGCAGTT

Homology of Contig U35_15996 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g01230.2	276	2e-59	protein\|phosphoglycerate mutase, putative, expressed
Brachypodium v1_2	Bradi5g02400.4	288	4e-62
Arabidopsis v10	None