barSeed - Barley Seed Development Database

Probe CUST_18018_PI390587928

Source Contig U35_27979

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_18018_PI390587928	Hv_44K_v2	AATGTTCCTGCTGGATGCTGAGCGCTGTCTCTTTCGAAAACTGTTTTATGGTTCAAAAAA	588	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.053	3.527	1.213	0.789	0.295	0.351
Raw	2457.883	4501.047	1300.960	1422.616	174.907	233.204

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC22044	657	3e-25	589 - 648	100	60 / 60	plus	ABC22044
Harvest35	U35_27979	657	3e-25	589 - 648	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_27979 657 Hv_44K_v2
GCCGCCTCCAGAGTTCAAACCACCCATCACCGTCTCCCTCCCCCCTTCAGTTCGGAGAGC
TCGAGAAGGAGGAAGGCGAAGCGGCGGGAGCGGAGGACCGACGAGATGCAGATCTTCGTG
AAGACGCTGACGGGGAAGACCATCACCCTCGAGGTCGTGAGCAGCGACACCATCGACAAC
GTCAAGGCCAAGATCCAGGACAAGGAAGGCATCCACCCGGACCAGCAGCGCCTCATCTTC
GCCGGGAAGCAGCTGGACGATGACCGCACCCTCGCCGACTACAACATCCAGAAGGAGTCC
ACGATCCATCTCGTGCTCCGCCTCCGCGGGGGCGCCTGCCTGATCGAGCCCAACCTCAAG
GCCCTCGCCCAGAAGTACAACCAGGGCAAGCTCATCTGCCGCAAGTGCTACTCACGCCTG
CCTCCTAAGGCCAAGAGTTGCCGCAAGAAGAAGTGTGGCCACAGCAACCAGCTGCGGTCA
AAGAAGAAGTGCAGGTACTGATGAAGTGCCATGAATGATCAGTTCAACCGGTTGACTACC
TGTTTAAGCTTGCCAGAAGTGTCAGAGTTTTAATAAGCATCTTAATGTAATGTTCCTGCT
GGATGCTGAGCGCTGTCTCTTTCGAAAACTGTTTTATGGTTCAAAAAAAAAAAAAAA

Homology of Contig U35_27979 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39500.1	130	3e-71	protein\|ubiquitin fusion protein, putative, expressed
Brachypodium v1_2	Bradi4g38540.1	130	2e-71
Arabidopsis v10	AT3G52590.1	128	1e-70	\| Symbols: UBQ1, EMB2167, ERD16, HAP4 \| ubiquitin extension protein 1 \| chr3:19505668-19506681 FORWARD LENGTH=128