barSeed - Barley Seed Development Database

Probe CUST_17991_PI390587928

Source Contig U35_27989

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17991_PI390587928	Hv_44K_v2	TGCTTTCAGATTTTCCAGGCTCTTGCTTATATGCACCAGAGGGGATACTTTCATCGTGAC	495	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK366131	2539	2e-24	1167 - 1226	100	60 / 60	plus	ABC09454 ABC46784
MLOC	AK362735	2736	2e-24	1167 - 1226	100	60 / 60	plus	ABC09454 ABC46784
MLOC	AK358457	3031	2e-24	1464 - 1523	100	60 / 60	plus	ABC09454 ABC46784
MLOC	MLOC_34019.1	2348	2e-24	1205 - 1264	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.4	1790	2e-24	1417 - 1476	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.6	2516	2e-24	1365 - 1424	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.2	2546	2e-24	1463 - 1522	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.3	2611	2e-24	1463 - 1522	100	60 / 60	minus	ABC09454 ABC46784
MLOC	MLOC_34019.5	2476	2e-24	1365 - 1424	100	60 / 60	minus	ABC09454 ABC46784
JLOC1	JLOC1_21965.4	2614	8e-25	1066 - 1125	100	60 / 60	plus
JLOC1	JLOC1_21965.3	2602	8e-25	1054 - 1113	100	60 / 60	plus
JLOC1	JLOC1_21965.2	2568	8e-25	1020 - 1079	100	60 / 60	plus
JLOC1	JLOC1_21965.1	2201	8e-25	1066 - 1125	100	60 / 60	plus
Harvest21	ABC26464	558	3e-25	496 - 555	100	60 / 60	plus
Harvest35	U35_27989	559	3e-25	496 - 555	100	60 / 60	plus

Contig Sequence (559 bp)

>U35_27989 559 Hv_44K_v2
AAGACAGCACAAGCTAGTGGAGGCCCACTGTTCAATTGACGGATAATATATCTGTTTGCG
CGAACTGATAGACAAGATATTGGTCGCTTAGACTTTGAAACACTTCTCTGTGCTTGTTGT
TGATTTTTCTTGATACCTAGTTGTCCCAAAGGAAAAAGCTTCTATCAGGCAACAAAATTA
CCGGAAAAATGGATAGATTTAAGTTGATTAAAGAAGTTGGTGATGGGACATTCGGGAGCG
TATGGCGCGCTATAAATAAACAAAATGGTGGCCGTTAAGAAAATGAAGAGAAAATATTAT
TCTTTCGAGGAATGTATGAGTTTACGTGAAGTAAAGTCTTTGCGGCGCATGAATCACCCT
AACATAGTGAAGCTCAAGGAGGTCATAAGGGAAAATGATATATTATACTTCATAATGGAA
TACATGGAGTGCAATCTCTACCAACTTATGAAAGACAGAGTCAAGCCTTTCGCGGAGTCA
GATGTCCGTAATTGGTGCTTTCAGATTTTCCAGGCTCTTGCTTATATGCACCAGAGGGGA
TACTTTCATCGTGACCTCA

Homology of Contig U35_27989 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g47220.1	460	4e-63	protein\|CPuORF20 - conserved peptide uORF-containing transcript, expressed
Brachypodium v1_2	Bradi3g52530.1	459	1e-62
Arabidopsis v10	AT4G19110.2	464	2e-57	Protein kinase superfamily protein \| chr4:10454770-10457468 REVERSE LENGTH=464