barSeed - Barley Seed Development Database

Probe CUST_17970_PI390587928

Source Contig U35_21595

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17970_PI390587928	Hv_44K_v2	AACTTGCTTGGTTGTACGTCTGTGCTCTAGCAGTACATTGCCAGAATATGGGTGGAAGTA	908	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.974	0.813	0.720	0.643	1.345	1.198
Raw	3.386	3.667	3.042	5.012	3.712	3.765

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_18007.1	728	2e-24	563 - 622	100	60 / 60	plus	ABC18116
MLOC	AK358330	836	7e-23	707 - 767	98	60 / 61	plus	ABC18116 ABC23510
JLOC1	JLOC1_12446.1	966	8e-25	591 - 650	100	60 / 60	plus
Harvest21	ABC18116	1061	3e-25	909 - 968	100	60 / 60	plus	ABC18116
Harvest35	U35_21595	1063	3e-25	909 - 968	100	60 / 60	plus

Contig Sequence (1063 bp)

>U35_21595 1063 Hv_44K_v2
CATCTTCGCCCTTTTCAACGAGAACGACAAGCCTGTCGACGAGCGGAACTTCGGCCTGTT
CGAGCCGAGCGGGCAGCCGGTGTATGCGGTCGACTTCAGGGCCGGCAGCAGCCCCAGCCC
CAGCCCCGGCCCAACCAAGTCCAGCTGGTGCGTGGCGAACGCGGCGGTCGGAGACGCTCG
CCTGCAGGCCGCGCTGGACTACGCGTGCAGCAACGGGGCGGACTGCGGCGCCATCCAGCC
AGGAAAGCCGTGCTACGAGCCCAACACCAAGGTCGCGCACGCGTCCTACGCCTTCAACGA
CTACTACCAGCGCAAGGGCCGGGCCAGCGGGACGTGCGACTTCAGCGGCGCCGGCTCTAT
CGTCTACCAGCAACCTGCCGGCATTTGCGACCCGAAGACGGCAGTCAGCTGGTGCGTAGC
CAATGCGGCGGTCGGGGACACACGACTGCAGATAGCACTAGACTACGCGTGTGGCAACGG
CGCAGACTGCAGCGCAATCCAGCGCGGCGCGCGTTGCTTCGATCCCGACACCAAGGTCGC
GCACGCGTCCTACGCCTTCAACGACTACTACCAGCGCAACGCCCGCTCCGCCAATTCCTG
CAACTTCAACGGCGCTGGTTCCATCGTCTACCAGCAACCAAAGATAGGCAACTGCGTGCT
CTCGTCAACAGGCTAAACTGGAGAAATAGTGGTGGATAAGGTTCAAGGCCATGATGCCAG
TCCCGTTTAAAGAGATTTAACAATAAATGTCCGTCTACATCACATCTAGATGTAAAATAA
TACCTCACGTCTCATTATGATGTTAGTGCCACGTTATTTCTTTTATTGTTTTTCGTGTTC
ACGTCAAAGGAGCGGATGGCTAGTACGTCTATGCATTGACCACTGAAGCGTAAGCTACTG
TACTTGCAAACTTGCTTGGTTGTACGTCTGTGCTCTAGCAGTACATTGCCAGAATATGGG
TGGAAGTAAAGCGGCGAGGCAGCGGTCCAGTGAGTCATCTCCGTCTGCTTTGTCTCCCGC
CTCCTGTCCTTTTGGTCATTCTGTTCGATGAGCAAAAAAAAAA

Homology of Contig U35_21595 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g35560.3	505	7e-103	protein\|glucan endo-1,3-beta-glucosidase precursor, putative, expressed
Brachypodium v1_2	Bradi1g25517.1	563	8e-119
Arabidopsis v10	None