barSeed - Barley Seed Development Database

Probe CUST_17900_PI390587928

Source Contig U35_4511

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17900_PI390587928	Hv_44K_v2	GGTGATTTGGGGGTGTAATTAGCACTATTGTATTTGGCTCCATTGATATACTAGTATATA	1372	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363948	1909	2e-24	1821 - 1880	100	60 / 60	plus	ABC09757
MLOC	MLOC_75522.2	1631	2e-24	45 - 104	100	60 / 60	minus	ABC09757
MLOC	MLOC_75522.3	1728	2e-24	45 - 104	100	60 / 60	minus	ABC09757
MLOC	MLOC_75522.1	1508	2e-24	45 - 104	100	60 / 60	minus	ABC09757
MLOC	MLOC_75522.4	1512	2e-24	45 - 104	100	60 / 60	minus	ABC09757
MLOC	MLOC_75522.5	1817	2e-24	45 - 104	100	60 / 60	minus	ABC09757
JLOC1	JLOC1_50384.6	1569	8e-25	1447 - 1506	100	60 / 60	plus
JLOC1	JLOC1_50384.5	1531	8e-25	1409 - 1468	100	60 / 60	plus
JLOC1	JLOC1_50384.4	1527	8e-25	1405 - 1464	100	60 / 60	plus
JLOC1	JLOC1_50384.3	1565	8e-25	1443 - 1502	100	60 / 60	plus
JLOC1	JLOC1_50384.2	1591	8e-25	1469 - 1528	100	60 / 60	plus
JLOC1	JLOC1_50384.1	1582	8e-25	1460 - 1519	100	60 / 60	plus
Harvest21	ABC09757	1486	3e-25	1373 - 1432	100	60 / 60	plus	ABC09757
Harvest35	U35_4511	1486	3e-25	1373 - 1432	100	60 / 60	plus

Contig Sequence (1486 bp)

>U35_4511 1486 Hv_44K_v2
GAAAAGTGGATGATGCTTCTAGCATGCCTGCTATGTGCTTCTGTTTCATACACGATTCAA
GCTTTCTATGATTTGTTTGGTTGATTCCTAGAGGTGTGATAGATGGACATCAATTAGTTA
TCCTTGCAGGGGAAAGGAAGTGATGGAGCACGGCGAGCAGGAGCAGCACGCCATGGAGCT
GCCGCCGGGCTTCCGCTTCCACCCGACCGACGAGGAGCTCATCACGCACTACCTGGCCAA
GAAGGTGGCCGACGCCCGCTTCGCCGCCCTCGCCGTCTCCGTCGCCGACCTCAACAAGTG
CGAGCCCTGGGACCTGCCAGCGCTGGCTAGGATGGGGGAGAAGGAGTGGTACTTCTTCTG
CCTCAAGGACCGCAAGTACCCGACGGGGTTGAGGACGAACAGGGCGACGGAGTCCGGCTA
CTGGAAGGCCACCGGCAAGGACAAGGACATCTTGAGGGGCAAGGCCCTCGTCGGCATGAA
GAAGACGCTCGTCTTCTACACCGGGAGGGCGCCCAAGGGCGAGAAGTCCGGCTGGGTCAT
GCACGAGTACCGCCTCAACGCCAAGCTCCACGCCGCCAGCACCAGCCGCGGCTCCCTCCC
CGGCAGCAGGGCCGCGTCGTCCTCGTCGTCCAAGAACGAGTGGGTGCTGTGCAGGGTGTT
CAAGAAGAGCCTCGTAGGCGTAGTGTCGCCGGCGCCGGCGTCGTCAGCAGCAAGGAAAAG
CGGCGTGGGGATGATCGAGGAGATAGGTTCCACCGTGGCCGCCGTCACCCCGCTCCCTCC
GCTCCTGGACATGTCCGGCTCCGGCGCCTCCTTCGACCAGGCGGCGCACGTGACCTGCTT
CTCCAACAACGCGCTGGAGGCGGGCCAGTTCTTCAACCCGACGGCGACGGACCAGGACCA
GCACGGCCTAGCCACATACTCCCCGCTAGCAAGCTTCGCGCAGTACGGCGGGCAGCTGCA
CCACGGCGTGAGCCTGAGCCTGGTGCAGCTCCTCGAGAGCAGCGGGTACCACCGTGGTCT
CGCCGACGACATGGCGCCGTGCGGCAACCAGCAGCAGCCGGCCGCGTGCAGGGGCGAGCG
GGAGAAGCTGAGCGCGTCGCAGGACACCGGGCTCACCTCCGACGTGAACCCCGAGATCTC
TTCTTCCTTGGGCCAAAAGTCGTTCGACCACGAGCCCGCGCCGTGGGGCTACTAACCAAG
CAAAGCTCTACGCATGCACCGCGTTCGCGGCGAAGGATGGATGGATCGATGGATTATTAG
TGCATTTACCGGTGCTTGATTACTGTAAATAAACCCGCGAGAGGTCGAGCTAGCACCGTC
AATTAGCTTCATTGTGATGTGATGATCTGTATAGTTGTAGATTAATCGGTGTGGTGATTT
GGGGGTGTAATTAGCACTATTGTATTTGGCTCCATTGATATACTAGTATATATATATGAA
TGTCATTGTCATTTCGCCAGGTTATTACTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4511 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g38720.1	344	2e-144	protein\|no apical meristem protein, putative, expressed
Brachypodium v1_2	Bradi5g12407.1	333	3e-139
Arabidopsis v10	AT5G61430.1	336	2e-82	\| Symbols: ANAC100, ATNAC5, NAC100 \| NAC domain containing protein 100 \| chr5:24701328-24702553 REVERSE LENGTH=336