barSeed - Barley Seed Development Database

Probe CUST_178_PI415269222

Source Contig TA36358_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_178_PI415269222	Hv_44K_v2	GAGTATGTCCCCCAGCAATTGTTAGTTTGCTCCCTTCGTTTCAAAAATAACTTAAGTTCT	982	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74291.4	1377	2e-24	1269 - 1328	100	60 / 60	plus	ABC06921
MLOC	MLOC_74291.2	1092	2e-24	1020 - 1079	100	60 / 60	plus	ABC06326 ABC06921
JLOC1	JLOC1_49505.2	1720	8e-25	1609 - 1668	100	60 / 60	plus
JLOC1	JLOC1_49505.1	1132	8e-25	1021 - 1080	100	60 / 60	plus
Harvest21	ABC06922	1039	3e-25	960 - 1019	100	60 / 60	plus
Harvest21	ABC06921	1134	3e-25	970 - 1029	100	60 / 60	plus	ABC06921
Harvest35	U35_2803	1009	3e-25	930 - 989	100	60 / 60	plus
Harvest35	U35_2802	1110	3e-25	946 - 1005	100	60 / 60	plus

Contig Sequence (1045 bp)

>TA36358_4513 1045 Hv_44K_v2
GGGGGCCAACCAACAACCAATTCCCCAATCCGCCTCCTCGCCCGGCTTCAAGAGGGCCCT
AATCCGGCGTCGAATCCGATGGCGGCCAGCGCCGGCAGCAAGATCCGCAACGCCAAGCTG
GTTCTTCTCGGCGATGTGGGTGCTGGGAAATCCAGCCTGGTGCTTCGGTTCGTAAAAGGA
CAATTTGTTGAGTTCCAGGAATCGACAATTGGAGCGGCTTTCTTCTCTCAAACACTGGCT
GTTAATGACGAGACTGTGAAGTTTGAAATCTGGGATACTGCTGGGCAGGAGAGGTATCAT
AGCTTGGCCCCCATGTACTATAGGGGTGCTGCCGCAGCCATAGTTGTCTATGACATCTCG
AACCAGGCATCCTTCACCCGAGCAAAGAAATGGGTTCAAGAACTTCAAGCTCAAGGAAAC
CAGAATACAGTAGTGGCTCTTGCTGGCAACAAAGCTGATTTGCTAGAGGCGAGGGAGGTT
CAAATAGAGGAAGCCAAGACATATGCGCAGGAGAATGGCCTCTTCTTCATGGAAACGTCT
GCCAAGACTGCAACCAATGTGAATGACATATTTTATGAGATTGCGAAGAGACTGCTGCAA
GGGCAGGCGGCGCAGAACCCACAGGCGGCGGGGATGGTTCTCTCCCAGAGACCCAACGAG
AGAGTGGTCAGCGCGGCTTCGTGCTGCTCCTGAAGCACAAGTTTTGGCCGCATTTGCCGT
CTGTATGAAATTTAGGAGAGGGATTTCGGCAAGCATTTGTCGTGCGGCTTCGTGCCGCTC
TTGATCTTGTGGCTGCCTTCCTGGCTGATCTGATATACTCTAGCACCACCGCGCCTGCCT
GACACTTTACTTTTCCGTTCGTGCGTTTGTCGTGTAAATGCCCACACTGGAATGCCCCTG
CAGATATCGCAATTCGCAAGTGAGAGTTACCTGCAAAGTGGTTGATTTTGTCTTGCTTTG
CTCCCCAAGTTTGATGTTCAGGGAGTATGTCCCCCAGCAATTGTTAGTTTGCTCCCTTCG
TTTCAAAAATAACTTAAGTTCTGCT

Homology of Contig TA36358_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g46390.1	204	1e-109	protein\|ras-related protein, putative, expressed
Brachypodium v1_2	Bradi1g12890.1	204	8e-110
Arabidopsis v10	AT5G45130.1	200	5e-95	\| Symbols: ATRAB5A, ATRABF2A, RABF2A, RAB5A, RHA1, ATRAB-F2A, RAB-F2A \| RAB homolog 1 \| chr5:18244495-18246060 FORWARD LENGTH=200