barSeed - Barley Seed Development Database

Probe CUST_17884_PI390587928

Source Contig U35_4527

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17884_PI390587928	Hv_44K_v2	AAGCTGCTTCCCAACCTTTTTGGTACAGCCTAGCCTTTTTGGAATGGAAGAAGATGATGT	373	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_65169.3	1483	2e-24	1081 - 1140	100	60 / 60	plus	ABC02541 ABC11192 ABC11193
MLOC	MLOC_65169.2	4468	2e-24	4367 - 4426	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
MLOC	MLOC_65169.1	4863	2e-24	4269 - 4328	100	60 / 60	plus	ABC02541 ABC11192 ABC11193 ABC21626
JLOC1	JLOC1_42866.1	4796	8e-25	4262 - 4321	100	60 / 60	plus
Harvest21	ABC11193	695	3e-25	302 - 361	100	60 / 60	minus	ABC11193
Harvest21	ABC11192	882	1e-23	415 - 475	98	60 / 61	plus	ABC11192
Harvest35	U35_4527	815	3e-25	374 - 433	100	60 / 60	plus

Contig Sequence (815 bp)

>U35_4527 815 Hv_44K_v2
TGAGAGGAATAAGCGGAAACGCGGGAGCAGCAATGGTCCTCAAGCTTCCTTGGAGGTCAT
GGATGATTTCAAGGTTGCGAATGGCCTTGAATGCAAGATAACCTGCAAATCCTCAAAGGT
TTCGTATGTCCTTGATACAGAAGACTTTTTATTCCGTATGAGGAACAGGAGGAGAATCTC
ATCTGGTGCAACAACCCCGGCACCTGGCAAGGCTGATTTTGTCAAGCCAGCTGATGCCGT
GAAAGCACAACGGTTTCATAAATTCCTTCTGTCCAGGTCCTAGGGCCATGCTGCAGATTC
TGCCATGGTATCATCTAATCCCGAGACGACGCCGGCCGACGTTCTTTGAACAAATGCGGC
GGGTGGGAAACCGAAGCTGCTTCCCAACCTTTTTGGTACAGCCTAGCCTTTTTGGAATGG
AAGAAGATGATGTGGTGCGGAGAGGACCGCTGGAGGTGGTAAATACCAACCAAAGCAAAG
CATGTGTAGGCAGTCTTGTTAAGTTGTTACCCGACGATGATGCGTTGCCGCCGTCGCTGC
TGGAAATGTGTATATTATTAATGTTATGTATGCCCAGAAGAGAATGTGACGTCGTGTTAT
CCATGATGTAGGGAGGGAGGTTATTATTGTTAATCTTACCGGTGGTCCGATCAACTGATC
ATTGTTAGTTGTTACTGTCCATATGTTTTTGTTGTTGTCCTGTCCCGCTGTTACATTTGC
TTTCGTGGTGAAGCGAATGCAGACTTGATTTAAATCTGGACATTACTATATTTATTAGTG
ATGCCAGCCGTCTGAATTAAAAAAAAAAAAAAAAA

Homology of Contig U35_4527 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None