barSeed - Barley Seed Development Database

Probe CUST_17794_PI390587928

Source Contig U35_40041

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17794_PI390587928	Hv_44K_v2	ACAATTTCAGCAGCTTACAGCTTATGCAACGACCGTGAAGCCAATCTATGGAGCCTATTT	530	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5773.1	1834	2e-24	1038 - 1097	100	60 / 60	plus	ABC06566 ABC06567
JLOC1	JLOC1_3735.1	1793	8e-25	952 - 1011	100	60 / 60	plus
Harvest21	ABC36334	593	3e-25	531 - 590	100	60 / 60	plus
Harvest21	ABC06567	1285	3e-25	498 - 557	100	60 / 60	plus	ABC06567
Harvest35	U35_40041	593	3e-25	531 - 590	100	60 / 60	plus
Harvest35	U35_16361	1285	3e-25	498 - 557	100	60 / 60	plus

Contig Sequence (593 bp)

>U35_40041 593 Hv_44K_v2
GCACAAACACCAAAGGATTCTCCACCGCCACCATCAGGTGTGCCAGAGAATAAGGGGCAG
GAAGGGGGTGAAGCGCAGGTCTCTGCGCAGCCGGTGCCATCGAAGAATGAGCGCAGCGAG
AGCCCCCCTCCCGGAATTCCTAAATCAACTGGCGGGACAGGACATGAAGGGGGAGGAAGT
TCAGGAAACAAGAAGCCTGCAGATGAATCAAAAGAGGGGGCTGAGAAGTGTGAGGATCCA
GCAGACACATGTTTGATTAAAGGGGAATTGTTTGCTTGCCTTCAGGTGTCTAAGACAGCT
TCAATTGGACAATTTTTTATAGTCCAGAATACTGGCCAGAAAAAAGTAACTGTTGACGTC
AAAGCAACATCAGATATAAGTATCAAGCAGACATTGGTACCTCTCAGCAAGGGTGAATCT
AAAAGGGTTAGCATAATCTATAACGGTCCAAATGGTGGAGAGGTTACACTAAACGTTGGG
ACTGAGCATTGTGTCTTGCACACCAGGCAGCCAGTTTATGATTGGCAACAACAATTTCAG
CAGCTTACAGCTTATGCAACGACCGTGAAGCCAATCTATGGAGCCTATTTTGG

Homology of Contig U35_40041 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g22250.1	370	6e-71
Arabidopsis v10	None