barSeed - Barley Seed Development Database

Probe CUST_17762_PI390587928

Source Contig U35_40065

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17762_PI390587928	Hv_44K_v2	GTTGTGATATTTATGTATGCTAAGGTTCACACACGTCTATACCAATGTTGGCCTAACTAT	491	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK375959	1901	2e-24	1190 - 1249	100	60 / 60	plus	ABC09264 ABC26240
Harvest21	ABC36367	582	3e-25	492 - 551	100	60 / 60	plus
Harvest35	U35_40065	582	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (582 bp)

>U35_40065 582 Hv_44K_v2
GCTCAACTAACATTATGCAGCTGGTTCTCAGCTTGATTGAAGACAGAAAACAATTGGCAC
TCGAACTATCTTCACAGATTAAGGCACGTCTTACAGAAAGGAGCTTGATAGGCTGATTAG
GCGGCCGGCGTGCTCGCTTGGGGCGTCGGACCAAGCACGGCAGCATCGGCGGCACCGTCG
TGGGTCTGGTGTCGATGCTCACCACCAGCACTGGCTGCAAGATGGTCGCGTTGCTCGGGC
GCCACAGCGGCAGCATCCTCCGGCTGCAAGATGGTCGCGCTGCTCAGGTGGCACAACGGA
GGGAGGGCCCGGGCACCGCCGGCGTTCCTCATCATACTGCCCGCGCTGGCGGGTGCGCTG
CACACGGAGGTGGTCGCGTGAAGACTGGAGATGCATCCTGCCACTCTGATGGTGTAAAGC
TAGATGTCCTGATTATTTGGGGGATATAAACTGCATTCTTCTTGCTGTTGTTGGGGTGGC
TTAATTTCGTCGTTGTGATATTTATGTATGCTAAGGTTCACACACGTCTATACCAATGTT
GGCCTAACTATTTATTTATTACTGCAGACGTTAGCTTGGAAG

Homology of Contig U35_40065 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None