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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17610_PI390587928Hv_44K_v2AGCCTCTGTTTGGTTGTTCTTTAATTCTCCCTCCACTCGTAAATATAAGTCTTTCTACAA734GeneList: blue
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.6011.4261.0240.8960.3910.358
Raw 224.281291.223196.008264.23841.30642.159



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK3718397683e-21701 - 7609758 / 60plus ABC12517 ABC16647 ABC26243
JLOC1JLOC1_42875.18084e-23723 - 7829859 / 60plus
Harvest35U35_205678213e-25735 - 79410060 / 60plus



Contig Sequence (821 bp)

>U35_20567 821 Hv_44K_v2
TGGCCAGGTACGAGAAAAAGTATGAGTACACCTCGAGTGGCAATAGTAGTATCTCCTCCG
ACGGGAAAAAAAATCGCTCCCCGAATCCTCTGCTGCCGGAAACGAGATCGCCGCCAACCT
CCTCCGTCCCTCCGCGGCCGGAAAGGAGCTCCGAGCTCGTCCCCGACCCCGCGCTCCCGT
CTCCGTTCCGCCGCCGTCGTCGACACCTCTGTTCAGCCGCCGCCGACCTCTGCACCCGAA
TCCAACCTGTGCCCCCGCCGTCAACCTCCCCTCCAGCGGCACGAGTAAAGGAAGATGCCT
TCACTTCAAATGGCTTTACCTCCAGAACTTGCTGATAATGCGCTCAGATTATTCCGCGAG
TGCTTAAGGAGGGCTAAGTTCATTGGTAATCAGCAACACAACACGGGGCTTCTCGTTAAC
ATGGTGAGGCAGCAGTTCAAGAAAAACATGCATGAGACTGATCCAGAGAAGATACAGAAA
ATGAAGGACGACGCGGCGAGGGGCCTTATCAATCACATCATATACGAGTCCGAGAAGATG
ACGGGGCGCAAGTTCTCAGGTTAAGACAGATGAGAGTGGAGTCTCACCGTATGCTGTCTG
CACGATGTAGGACCAGCTAATGATCTGCTTGGTTTTATACTCATTAAGACGGTGAATTTT
TATTTACTTTTTGCATTTTCCTGTGGTTCCGGATGTAATAATTGACCTACACAACACATG
GTAAGTGGCCTGCTAGCCTCTGTTTGGTTGTTCTTTAATTCTCCCTCCACTCGTAAATAT
AAGTCTTTCTACAAGTTTCAGCANAAAAAAAAAAAAAAAAA



Homology of Contig U35_20567 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2Bradi4g04407.11413e-52
Arabidopsis v10None