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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_17605_PI390587928Hv_44K_v2GTTGTCGCTGTTGATGATGATGGTCACTTCATTGAGAAGATATCTCAGTTCAAGGGCGAC414GeneList: ivory
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 1.2430.8331.4201.2230.9670.838
Raw 206.932200.231320.910397.012118.514115.652



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK36361350707e-231217 - 12779860 / 61plus ABC09189 ABC13844 ABC17852 ABC41122 ABC44969
MLOCMLOC_4966.537633e-211157 - 12179759 / 61plus ABC09189
MLOCMLOC_4966.238293e-211161 - 12219759 / 61plus ABC09189
MLOCMLOC_4966.337503e-211161 - 12219759 / 61plus ABC09189
MLOCMLOC_4966.133973e-211161 - 12219759 / 61plus ABC09189
MLOCMLOC_4966.438063e-211158 - 12189759 / 61plus ABC09189 ABC38397
JLOC1JLOC1_3163.139482e-211159 - 12199759 / 61plus
Harvest35U35_325424773e-25415 - 47410060 / 60plus



Contig Sequence (477 bp)

>U35_32542 477 Hv_44K_v2
CTGGTAGCGTTGTGTGTCAATGCCAATCTTGTGTATGCCAAGGTTAAGGACAAGTCAAAT
GGAACAGTATACATCGTTGCAGAAAGTAGGCTCGGGCAGTTGCCAGTTAAAGCCAAAGCT
TCTGGAAAGAAACAAGCACCTTCTAAGGGAAGCAATGCTGAAGCTGTCCAGGGTGGTTTG
GATACTGAGTCATATGAATTATTGGCAAAGATTCCTGGCTCAAGCCTAGTAGGCCTAAAA
TACACTCCTCTGTTTGATTTTTTCTTGGAGCTTCAAGAAACTGCCTTTAGGGTGATTGCG
GATAACTATGTGACTGATGATAGTGGAACCGGTGTTGTCCATTGTGCTCCTGCATTTGGT
GAAGATGATCATCGTGTTTGCCTTAGTGCTGGGATAATTGAGGCTAGTGGACTTGTTGTC
GCTGTTGATGATGATGGTCACTTCATTGAGAAGATATCTCAGTTCAAGGGCGACATG



Homology of Contig U35_32542 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g43760.111581e-87protein|tRNA synthetase class I, putative, expressed
Brachypodium v1_2Bradi1g30610.111737e-88
Arabidopsis v10None