barSeed - Barley Seed Development Database

Probe CUST_17597_PI390587928

Source Contig U35_32548

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17597_PI390587928	Hv_44K_v2	CTGAACTTAGCAATGGGGATGGGGTTTCCACGTTTGAGTTTATTGGGAGTGGAGTTATCT	383	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK369309	5953	2e-24	2468 - 2527	100	60 / 60	plus	ABC05326 ABC07192
MLOC	MLOC_9931.2	5444	2e-24	2057 - 2116	100	60 / 60	plus	ABC05326 ABC07192
MLOC	MLOC_9931.1	5648	2e-24	2058 - 2117	100	60 / 60	plus	ABC05326 ABC07192
JLOC1	JLOC1_6453.1	5671	8e-25	2059 - 2118	100	60 / 60	plus
Harvest35	U35_32548	453	3e-25	384 - 443	100	60 / 60	plus

Contig Sequence (453 bp)

>U35_32548 453 Hv_44K_v2
TTCACGTTCAAGACGCAGCCGCCGACGCAGCAGTGCTGGGAATACTGATAATAATTCCTT
GGATGAACCAAAGAGTTCCCATACTACTGTTGCCAATTCACTGCCAAGCACGCTAGAAAG
TCCAAATACTAGTATTCGTGCTTCAGTTAGTGATCGCGCAAAGTTATTCAAAGATAAGTA
CTTCCCCTCTGAACCCGGCTCAAGTGATATTGCAGTTACTGATAACCTTTTGAAGCTACG
GGCACTCTGTGCAAAATTAAATGCCACTGCAGACACTGTTAAAACAAAAGCTAAAGGGAA
ATCAAAGTCACTGGGAGGTGATGATTTTGATATCTTATGCAATGTTGAGGAACAGTTAGA
CGACATCATAGCTAANATATTGTCTGAACTTAGCAATGGGGATGGGGTTTCCACGTTTGA
GTTTATTGGGAGTGGAGTTATCTCAGCGTTGCT

Homology of Contig U35_32548 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi5g04567.1	1797	6e-66
Arabidopsis v10	None