barSeed - Barley Seed Development Database

Probe CUST_17574_PI390587928

Source Contig U35_20578

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17574_PI390587928	Hv_44K_v2	TCCCCTATTTAAGTCTTATTCTAGTTTTCAAATTATAATTGCATGGTAGTCATCAGCCCC	905	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26278.1	1492	2e-24	916 - 975	100	60 / 60	plus	ABC14383
JLOC1	JLOC1_17849.1	1155	8e-25	579 - 638	100	60 / 60	plus
Harvest21	ABC13599	656	3e-25	590 - 649	100	60 / 60	plus
Harvest35	U35_20578	972	3e-25	906 - 965	100	60 / 60	plus

Contig Sequence (972 bp)

>U35_20578 972 Hv_44K_v2
GTTGAACCCTAGCCCTCCCCGATCCAGATCCCTCCCCTCCCCTCCCCTCGCTGTCGTCCA
CCGCCGCTCGCCGTCATCCACCGCCCCTCGCCGCTAACGCCGGCCTCGACCCCCTCCACC
CCCACCCGAACCTGCTGCTGGACAGGGACAGAGCCACCGCGGCCACGGCCCACCAGGCGT
CCTACGAGGTCGACGCGGCCAAGACCGGCGATAAGGGCTCCGACGGCTAGGGTTCCTCGC
CGCCGCCGGCCCGCCGCCCCTCCCTCTCCCCAACAACCAGAGAGAGAGAGATCTGCCTCC
ATCCCGAGCGCGACAGCTAGGGTTCCTCGCCGCCGCCGGCCCGCCGCCCCTCCCTCCCAG
CCGGCCGAGGCCCCCGTCTCCACCCGGCAGCAGCGCCTCCCTCCCTCCCGCCCCGGCGCG
GCCGGTCCCGCCGCCCGCAGCCACGCCGGGGACCGGTCCATAGGCAGCTGGTCGCGCCTT
CTGGTGGAGGGTCTCATGCCAACAATTCTGGATGCATCTATGACATGGTGGACAGGGCAG
CAGAAGCGAGTCAGTGTGAGGTGGCAGCCGAGGGAGTTGTTTTCCAGGTAATTATTGTAT
TTGAATTGGTCCATGGTTTCTGTCGAGAAGCAACAATCGAATACTGCAAGCACTGAACAT
GCCAGTCATTTTGTCTTCATGTCAAACTGGACTTGTAAGCATATTCACGAAGATTCAGCA
GCATGGTGCAAGGCTGACAGGCACTACTTGTTCATAACAATCAGATACGGGAATAGCAAC
ACTGCATGATAATTTTTGGAGTCTCTGTTCGGACAGTTCAGTAACATATTGAAAACCTAT
ACGACTCACAAGATTTAAGTGTTGTGATGATTGGACAAGGAGCATCAGATCATGTCGTTG
TCTTGTCCCCTATTTAAGTCTTATTCTAGTTTTCAAATTATAATTGCATGGTAGTCATCA
GCCCCTGCTTTG

Homology of Contig U35_20578 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None