barSeed - Barley Seed Development Database

Probe CUST_17503_PI390587928

Source Contig U35_22277

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17503_PI390587928	Hv_44K_v2	TTGGGATCATGGAGTAAATCAAACGAGGATGCAAGTATGCAACTCATGTTCGTGTAGGTA	432	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK359822	1308	2e-24	1039 - 1098	100	60 / 60	plus	ABC12083 ABC18393 ABC20951
MLOC	AK368466	1258	2e-24	904 - 963	100	60 / 60	plus	ABC12083 ABC18393 ABC20951
MLOC	MLOC_1194.2	911	2e-24	629 - 688	100	60 / 60	plus	ABC12083 ABC18393 ABC20951
MLOC	MLOC_1193.5	979	2e-24	725 - 784	100	60 / 60	plus	ABC12083 ABC18393 ABC20951
MLOC	MLOC_1193.4	995	2e-24	713 - 772	100	60 / 60	plus	ABC12083 ABC18393 ABC20951
MLOC	AK356932	1444	6e-24	1240 - 1298	100	59 / 59	plus	ABC12083 ABC18393 ABC20951
JLOC1	JLOC1_738.3	272	8e-25	35 - 94	100	60 / 60	plus
JLOC1	JLOC1_738.2	263	8e-25	26 - 85	100	60 / 60	plus
Harvest21	ABC18393	771	3e-25	433 - 492	100	60 / 60	plus	ABC18393
Harvest21	ABC20951	660	1e-24	239 - 297	100	59 / 59	minus	ABC20951
Harvest21	ABC12083	1271	1e-24	934 - 992	100	59 / 59	plus	ABC12083
Harvest35	U35_22277	771	3e-25	433 - 492	100	60 / 60	plus
Harvest35	U35_24350	660	1e-24	364 - 422	100	59 / 59	plus
Harvest35	U35_19901	1270	1e-24	933 - 991	100	59 / 59	plus

Contig Sequence (771 bp)

>U35_22277 771 Hv_44K_v2
GGCGGCTGGGCGTGCCGACGCTGGTGCTGCGCACCGGCAGCGCCGCCTGCTTCCGCAACT
TCCTGGCCAACCCCGTGCTCTGCGAGAAGGGGTACCTCCCGGTGGGGGCGGAGTCGAAGC
TGGACGCGCCGGTGAGGGAGCTGCCGCTGTACCGCGTCCGGGACCTGATGGGCGCCAACA
GCAGGAGCCGCCACGAGCACGAGCTCATGTGCGAGCTGCTGTCCCGGGCGGTCGAGGCGG
TGCGGAGCTCCGCAGGGTTCGTCCTCAACAGATTCGACGCGCTGGAGGCGGACGACCTGG
CGGCGACCCGGCGCGACCTCGCCGGCGTGCCCGTGTTCGACGTCGGCCCGCTCCACAAGC
TCTCCCCGGCGTCGTCCTGCAGCCTTCTTCAGCAGGACCGCTCCCAGCAAGGGATCGAGT
GAAGAAACTGGATTGGGATCATGGAGTAAATCAAACGAGGATGCAAGTATGCAACTCATG
TTCGTGTAGGTAGTCATTCAGACATTTCTTAACTCTATGGCAAATAGTTCACATGGTAGA
GCCAGCTGTGGTGGAGAGGCTAGATAGTTTTAGTATTCAGACTTTCAGTTGCTGCTAGCT
CTTCTTTGCTCTACCGGAATGGATGTGTTTTTGTCCACATAAAATTCTAACATGAATTTT
CTATTTAGCTAGCAAATTCAATAATTTATGTACCGTATTTGCATTTTGTAGTCATACTTT
CTATTGGAATTTGACTTATAATGGTTTTTACCGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22277 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None