barSeed - Barley Seed Development Database

Probe CUST_17502_PI390587928

Source Contig U35_22278

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17502_PI390587928	Hv_44K_v2	CTGCCCAATAATTTGTACCAACATTCCTTTGGTTTATGGCAACAAGATTATTATCGGTTA	436	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61206.1	2443	2e-24	59 - 118	100	60 / 60	minus	ABC18447 ABC18746 ABC46355
JLOC1	JLOC1_39995.1	2407	8e-25	2239 - 2298	100	60 / 60	plus
Harvest21	ABC46355	273	3e-25	15 - 74	100	60 / 60	minus	ABC46355
Harvest21	ABC18447	510	3e-25	17 - 76	100	60 / 60	minus	ABC18447
Harvest35	U35_22278	512	3e-25	437 - 496	100	60 / 60	plus

Contig Sequence (512 bp)

>U35_22278 512 Hv_44K_v2
CCAGGGGTGTGGTTCATGCATTGCCACTTGGAGGTGCACGTCAGCTGGGGCCTGAAAATG
GCGTGGGTGGTGCAGGACGGGAGCCTCCCGGAACAGAAGCTGCTCCCTCCGCCGTCCGAT
CTCCCCAAATGTTAGGAAGAGATTGCGTCTTCTCCAATTCCCGCAGGACATTCACCCGCT
TTTGCTTGCGTTGCGTTGCGTGCGTGCGTGCACAACTGATTGCTTGTGTGTCGCGCGTGC
GCGCGGTTGGTGCCATCAAGTGCTTTCTTAGCTGTGTGCTCTTTAATTTTCATGTCAAGT
CCTCGTCTGATTAATTGGTGAGAGTCATGGGCAGGTTTCTTGATCAGAAGCAACAAGTGT
AGGACTTTCATTTTGGATTGCTGATTAGTCCCATTTTTTTTGTAACGTACTGGAGCTGGG
TCATATGCCTATGAGCCTGCCCAATAATTTGTACCAACATTCCTTTGGTTTATGGCAACA
AGATTATTATCGGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_22278 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None