barSeed - Barley Seed Development Database

Probe CUST_174_PI415269222

Source Contig TA40112_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_174_PI415269222	Hv_44K_v2	CTTAGATAAGGGACATGTTATCACATCATGTTTGTACCATGTATATGTGTTGTAGGCAAA	1603	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_22145.1	2029	2e-24	32 - 91	100	60 / 60	minus	ABC06838 ABC07362 ABC09216
MLOC	MLOC_22145.2	1823	2e-24	26 - 85	100	60 / 60	minus	ABC06838 ABC07362 ABC09216
JLOC1	JLOC1_15349.1	2034	8e-25	1817 - 1876	100	60 / 60	plus
Harvest21	ABC09216	1702	3e-25	1604 - 1663	100	60 / 60	plus	ABC09216
Harvest35	U35_15228	1702	3e-25	1604 - 1663	100	60 / 60	plus

Contig Sequence (1671 bp)

>TA40112_4513 1671 Hv_44K_v2
TAGTGAGTGAGAGAGGGAGAGGGAGAGATCACGAGGCGGGGCTTCTCCTCCGCCCAATCC
GTTCCACCACCCTCCCCCCCTCTGGAGCTGGAGCTGGAGCTCATCATCAGCTAATTAAAC
TAAAGGCAGCAGGCCAAGGCTTCTTTCTCTCTTGGATCGCGGGGTCACGGGAGGCGCGCG
CGCGGGAGCTTGCTTGCTCGCTCGATCGACCGACCTCGCGGCGGTGGGGGAAGGGAAGGG
AAGGGGAAGGGGGATGGACCGGGCGGCGCTGACGGTGGGGCCGGGGATGGACATGCCCAT
AATGCACGACGGCGACCGGTACGAGCTCGTCAAGGACATCGGCTCCGGCAACTTCGGCGT
CGCGCGCCTCATGCGCAACCGCGCCGACGGCCAGCTCGTCGCCGTCAAGTACATCGAGCG
AGGGGAGAAGATTGACGAGAACGTGCAGCGGGAGATCATCAACCACCGGTCGCTGCGCCA
CCCCAACATCATCCGCTTCAAGGAGGTCATCCTCACGCCCACGCACCTCGCCATCGTCAT
GGAGTACGCCTCCGGCGGGGAGCTTTTAGAGCGCATATGCAACGCCGGCAGGTTCAGCGA
GGACGAGGCGCGTTTCTTTTTCCAGCAGCTGCTCTCAGGGGTCAGCTACTGCCACTCCAT
GCAAGTATGCCATCGCGACCTGAAGCTGGAGAACACCCTGCTGGACGGGAGCACGGCTCC
CCGCCTCAAGATATGCAACTTTGGATATTCCAAGTCGTCGGTTCTTCACTCGCAGCCTAA
ATCAACCGTCGGAACCCCCGCATACATTGCTCCTGAGGTTCTTCTCAAGAAGGAATATGA
TGGAAAGATTGCGGATGTGTGGTCGTGTGGAGTGACGCTTTATGTTATGCTAGTTGGTGC
ATATCCCTTTGAGGACCCGGATGAGCCCAAGAATTTTAGGAAGACAATTCAGAGGATATT
GAGCGTGCAGTACTCGATTCCCGATTACGTGCACATATCTTCCGAGTGTCGAGATCTTAT
TGCCAAGATTTTCGTCGGCAACCCAGCTACCAGAATCACAATCCCCGAGATAAGAAACCA
TCCGTGGTTCTTGAAGAACCTCCCAGCTGACCTGGTGGATGATAGCACCATGAGCAGCCA
GTACGAGGAGCCTGAACAGCCGATGCAGAGCATGGACGAGATCATGCAGATCCTGGCGGA
GGCCACCATCCCGGCGGCTGGTTCTCGGATCAACCAGTTCTTGAACGACGGTCTCGACCT
TGACGACGACATGGACGACCTTGATTCGGACGCCGACCTCGACGTGGAAAGCAGCGGGGA
GATCGTATATGCCATGTGACACTGCAAAGGCTCTCACATATAAGTTGACCGAAAGATGGC
CAAGATACTCGAGGAAGGGATAGATATCTTGAGGCTACCGCTGAAGTTCGGCTGCTCATG
CTTGATAGCCCACAAATGTTACTTTGTTGTTGTTTTTGTTGTTGGTCCCTGTACTTCCGA
TGTTCTGAAACGGTTTAGCCTGCCTTTTGGATGTAACCATGCTTTGCTCTAATGCCGTGT
GACTATCTCCGCTAATTTGGGAACTGACCGTGTCTGTGCTCCCCTTAGATAAGGGACATG
TTATCACATCATGTTTGTACCATGTATATGTGTTGTAGGCAAATAAAGGGC

Homology of Contig TA40112_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g41460.1	363	protein\|CAMK_CAMK_like.20 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Brachypodium v1_2	Bradi1g14720.1	362
Arabidopsis v10	AT4G33950.1	362	\| Symbols: OST1, SNRK2-6, SRK2E, SNRK2.6, P44, ATOST1 \| Protein kinase superfamily protein \| chr4:16272364-16274657 FORWARD LENGTH=362