barSeed - Barley Seed Development Database

Probe CUST_174_PI390587928

Source Contig U35_45853

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_174_PI390587928	Hv_44K_v2	AGCGGCTCAGTTGGCGTGTCCCATATACCACGCCTGGCTGTCTATGCTGCCGACCAAACG	300	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29571.1	430	2e-24	49 - 108	100	60 / 60	plus	ABC11623
JLOC1	JLOC1_19663.1	441	8e-25	47 - 106	100	60 / 60	plus
Harvest21	ABC45206	360	3e-25	301 - 360	100	60 / 60	plus
Harvest35	U35_45853	360	3e-25	301 - 360	100	60 / 60	plus

Contig Sequence (360 bp)

>U35_45853 360 Hv_44K_v2
CACTGGGCTANCCCAAACTTTTTCGCCTTCTTCCCCTCCACCAACAGCGCCGCTGCCATC
GCCGGCGACCTCATCGCATCTGCCATGAACACCGTTGGATTCACGTGGCAGGCCTCGCCC
GCAGCCACCGAGATGGAGGTTCTCGCTCTGGAGTGGCTTGCACAGCTTCTGCGCCTACCC
ACCACCTTCATGAACCGCACCAGCACTGGTCGTGGCACCGGCGGTGGCGTCATCCTTGGC
ACGACCAGTGAGGCAATGCTTGTCACGCTTGTCGCCGCCCGTGACGCGGCACTGCGTCGA
AGCGGCTCAGTTGGCGTGTCCCATATACCACGCCTGGCTGTCTATGCTGCCGACCAAACG

Homology of Contig U35_45853 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None