barSeed - Barley Seed Development Database

Probe CUST_1748_PI390587928

Source Contig U35_6244

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_1748_PI390587928	Hv_44K_v2	AGTGGGCAGATGGAAAGAAGTTTGAGGACAAATTTGTGGATACCTTACTAAAGTACGGAT	694	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250115.1	1673	2e-24	776 - 835	100	60 / 60	plus	ABC16494 ABC33445
MLOC	MLOC_56555.3	1797	2e-24	472 - 531	100	60 / 60	plus	ABC16494 ABC33445
MLOC	MLOC_56555.2	2336	2e-24	483 - 542	100	60 / 60	plus	ABC15587 ABC16494 ABC33445
MLOC	MLOC_56555.1	1915	2e-24	483 - 542	100	60 / 60	plus	ABC16494 ABC33445
JLOC1	JLOC1_36588.4	1489	8e-25	118 - 177	100	60 / 60	plus
JLOC1	JLOC1_36588.3	517	8e-25	118 - 177	100	60 / 60	plus
JLOC1	JLOC1_36588.2	2410	8e-25	182 - 241	100	60 / 60	plus
JLOC1	JLOC1_36588.1	2175	8e-25	182 - 241	100	60 / 60	plus
Harvest21	ABC14194	757	3e-25	695 - 754	100	60 / 60	plus
Harvest35	U35_6244	757	3e-25	695 - 754	100	60 / 60	plus

Contig Sequence (757 bp)

>U35_6244 757 Hv_44K_v2
GAGAGAGGGAGGGGCCCGGCCGTGCCGTCGTCGTCCTCCTCGCTCCATTAGAGCCAAGCT
CTCGGGTCTCCGCCTCTGCTCGCCTCCCGCTGATATCGGAACCGCAGCGGGCGAAGCAGC
AGCACTATGCGTCCGTCCCTCTGTCATGTTCCTTTTCTTCTTCTGCTACTATTACATGTG
GCCATTGCTAGACCATTCTTTCCACTGCCAAGTAAGACTAGTAATGAAGAGAAGAAGCCA
ATACAGACATTTCGACCGTATAACATTGCTCACCGCGGCTCAAATGGGGAAATCCCGGAG
GAAACAAGTGCTGCTTACCTGAGGGCTATTGAAGAAGGTGCAGATTTTATAGAGACTGAC
ATCCTTGCTAGCAAAGATGGTGCATTGATCTGCTTTCATGATGTGACACTTGATGATACA
ACTGATATTTCCGTCCATAAGGAGTTCGCCAATCGAAGGAGAACCTACGAGGTGGAATGG
GCCAACGTTACTGGCTGGTTTGTAGTGGATTTCACGCTTGAGGAACTTAAAACACTTAAA
GTGAAGCAGCGATACCCATTCAGAGATCAACAATATAATGGCAAATTTTCAATCATCACA
TTTGAAGAATTCATTTCAATTGCCTTAGATGCAAGCAGAACCGTTGGAATATATCCAGAG
ATAAAAGATCCAGTTTTTATCAACAAGCACGTAAAGTGGGCAGATGGAAAGAAGTTTGAG
GACAAATTTGTGGATACCTTACTAAAGTACGGATACA

Homology of Contig U35_6244 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g55780.1	392	1e-114	protein\|glycerophosphoryl diester phosphodiesterase family protein, putative, expressed
Brachypodium v1_2	Bradi2g50710.1	392	4e-130
Arabidopsis v10	AT5G08030.1	372	3e-94	PLC-like phosphodiesterases superfamily protein \| chr5:2575152-2576770 REVERSE LENGTH=372