barSeed - Barley Seed Development Database

Probe CUST_17485_PI390587928

Source Contig U35_22283

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17485_PI390587928	Hv_44K_v2	AAGAACTCAACGCATTGCTTTCTGGAGATAATGACCCTTACCCTTGCTTCATTGAGGTCC	631	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54119.2	3575	2e-24	2792 - 2851	100	60 / 60	minus	ABC17141 ABC19112 ABC38861
MLOC	MLOC_54120.5	2025	2e-24	1281 - 1340	100	60 / 60	minus	ABC17141 ABC38861
MLOC	MLOC_54120.4	1567	2e-24	823 - 882	100	60 / 60	minus	ABC17141 ABC38861
MLOC	MLOC_54120.3	2813	2e-24	2081 - 2140	100	60 / 60	minus	ABC17141 ABC19112 ABC38861
MLOC	MLOC_54120.1	3759	2e-24	2995 - 3054	100	60 / 60	minus	ABC17141 ABC19112 ABC38861
MLOC	MLOC_54120.2	3757	2e-24	2995 - 3054	100	60 / 60	minus	ABC17141 ABC19112 ABC38861
JLOC1	JLOC1_34825.5	3627	8e-25	679 - 738	100	60 / 60	plus
JLOC1	JLOC1_34825.4	3587	8e-25	689 - 748	100	60 / 60	plus
JLOC1	JLOC1_34825.3	3577	8e-25	679 - 738	100	60 / 60	plus
JLOC1	JLOC1_34825.2	3364	8e-25	689 - 748	100	60 / 60	plus
JLOC1	JLOC1_34825.1	3354	8e-25	679 - 738	100	60 / 60	plus
Harvest21	ABC16028	1044	3e-25	629 - 688	100	60 / 60	plus
Harvest21	ABC27365	383	1e-23	96 - 156	98	60 / 61	plus
Harvest35	U35_22283	1047	3e-25	632 - 691	100	60 / 60	plus

Contig Sequence (1047 bp)

>U35_22283 1047 Hv_44K_v2
GCGTCGGAGTAGACGGGAATGGCTTCCCGCCTCCTAACCAGATCAACGGCCGCGGTCCTC
GTCTCCCACCTCCGCTCCAGGACGCCGAATCCTACCCACCACCTCCTCACACATGGAGCT
GCCATGTCCTCCCTCCTGGGACCCACTCATGGCGTTCCTGCCACCGTCAGATCACGCCCC
CTCCTGGAGCCGACTCGGTGGTTCTCTTCGCCGGCGCCCGTGGTGGAGGCGCCGAGGACG
GTTGACGGCCTGACTGTCGACTCTATTGCCGACAAGGGGTGGACGATCCTCGCCGATGCC
GAGAGCGACTGGCGGAGCCACGCCGCCGCCGTCGCGCAGTCCATCAGGCTTATTAAGAAG
CGTCTCAAGCTTTGGAAATGGTTACTGGAGAGGTCGAAGCAGTTGGCTGTGGTATTGGAG
AAGCCAGACCTCTGGGAGGATCCAGTTTTTGCTGGGAAGGTTAGTCGTGAACAAGGCGAG
CTCATGGGCAAGATTAAGTCAGTGAATCAATTCGAGCAACAGTTGATGGAGCACATCGAT
ATGTTGAGGCTTGCACGTGACGAGGGTGACAATGAACTTGAGACGGAATCCATGAGAGCA
TTGGCCGATATGAGAAGAGAAGCAAAGGAGAAAGAACTCAACGCATTGCTTTCTGGAGAT
AATGACCCTTACCCTTGCTTCATTGAGGTCCAAGCAGGAGCCGGTGGCGTTGAGAGCATG
GATTGGGCTGCCATGGTTATGAACATGTACAAATCATGGGCTCAGCGACGGGGATACAGA
GTCACTGTAATAGAAGAAATGCCTGGTGAACTAGCAGGAATCAAGAGGGCTACTATCAAA
GTTGACGGTGAGTATGCATTTGGATATGCCAAATCTGAAATAGGAGTTCACAGATTAGTG
CGGATTTCTCCATTTGACAGTGGAAAGCGGCGGCACACTTCCTTTGCTGCTGTCGCTGTA
ATACCTATTCTTGGTGAGTCCTCTAGCCGATACCAGATAAATGAATCGGATCTTCGGATA
GAACGCTTCCGTTCTGGTGGACCCGGC

Homology of Contig U35_22283 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g19300.1	469	2e-179	protein\|peptide chain release factor protein, putative, expressed
Brachypodium v1_2	Bradi1g64580.1	466	0.0
Arabidopsis v10	AT1G56350.1	482	2e-122	Peptide chain release factor 2 \| chr1:21094840-21097826 FORWARD LENGTH=482