barSeed - Barley Seed Development Database

Probe CUST_17402_PI390587928

Source Contig U35_18273

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17402_PI390587928	Hv_44K_v2	ATACGTGATACCCTTAAGGTCCTTCAGCAAGCCTACAAAACTTTGGACGAGATACCGCTT	1437	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_19304.3	1486	2e-24	477 - 536	100	60 / 60	minus	ABC10920 ABC40367
MLOC	MLOC_19304.1	1514	2e-24	578 - 637	100	60 / 60	minus	ABC10920 ABC40367
MLOC	MLOC_19304.2	1517	2e-24	578 - 637	100	60 / 60	minus	ABC10920 ABC40367
MLOC	AK368050	2822	7e-23	2347 - 2406	98	59 / 60	plus	ABC10920 ABC40367
JLOC1	JLOC1_13394.2	1611	8e-25	902 - 961	100	60 / 60	plus
JLOC1	JLOC1_13394.1	1614	8e-25	905 - 964	100	60 / 60	plus
Harvest21	ABC10920	1947	3e-25	1438 - 1497	100	60 / 60	plus	ABC10920
Harvest35	U35_18273	2113	3e-25	1438 - 1497	100	60 / 60	plus

Contig Sequence (2113 bp)

>U35_18273 2113 Hv_44K_v2
CGACTTGGTTATGTTGGCGTCGTAAACCGCAGCCAGCAGGATATCAATTCAGATGTCAGT
GTCAAGCAGGCTCTGATCCGAGAAGAAAGTTTCTTCCGTACTCATTCGGCATACAATGGT
CTTGCTAAGCACTGTGGGATACCACAGTTAGCAAAGAAGCTAAACCAGATCTTGGTCCAA
CATATAAGAACTATTCTGCCTGGACTGAAGGCACGCATAAGTTCTCAATTGACAGCCATT
GCTAAGGAGCATGCCTTTTATGGTGACCCAGTCGAGTCCAAGGCTGGGCAAGGTGCTAAG
CTTTTGAACATTCTAGCTAAATATTGTGATGCTTTCTCGTCTATGGTAGAAGGAAAAAAT
GAAGATATATCAACAATCGAGCTTTCTGGTGGAGCAAGAATTCACTATATTTTTCAATCA
ATCTTTGTCAAAAGCTTAGAGGGTGTTGACCCTTGCGAGGATGTCACTGATGAAGATATC
CGCATGGCTATACAGAATGCAACTGGTCCTAGGAGTGCTTTGTTCGTACCGGAGGTGCCA
TTTGAAGTCCTTGTGCGCAGGCAAATCAGCAGATTGCTTGATCCAAGTCTTCAGTGTGCA
GATTTCATATACGAGGAGCTGGTTAAGATGAGCCACCGTTGCCTTTGCAATGAGCTGCAG
CAGTTTCCTATACTCAGAAGGAGCATGGATGAAGTAATTGGGAAGTTTCTACGGGATGGG
CTTAAGCCAGCACAAGATATGATAGCACACATAATTGAGATGGAGGCCGATTACATAAAT
ACATCTCACCCAAGTTTCATCGGTGGCAGCAAGGCTGTAGAGCAAGCACAGCAACAAGTT
AGAGCAGCTAGATTGCCTGCAACAGTGGTTAGAAGGGATGGAGTAGATGCAGATAGGCCA
CAGGCTTCTGAAAAAACCCAAAAAGCACGTGCATTATTGGGTAGAACTACTGGTGTAAAT
GGAGTTATCACCGACCAGATCCAGGGGGTACGATCGGCTGCTGAGGCAGAGAGACCAGGA
TCTTCAGGTAGTGGAAGCACTTCGTTTTGGGGCTCAATATTCACCTCAAGCGAAGACCGT
GCACCTTCTTCAGCAAGAGGTAGCTCAACGAACAAATCTTATGCTTCAGCTACTCCCAAC
CTGGAACATTCATTCTCTTCAATACAGTTAAAAGAGCCACCGCTAGTCCTCAAGCCTTCA
GAAAATCATTCTGAGCAGGAGGATCTTGAAATAGCAATCACAAAATTGCTGCTGCAGTCA
TATTACAATATAGTAAGGAAAAATGTCGAGGATTTTGTACCAAAAGCAATTATGCATTTT
CTGGTTAATCACACGAAAAGGGAGCTGCATAATTTCCTCATAACTACCCTTTATAGAGAG
GAGCTCTTTGGGGACATTCTCAGAGAACCTGATGAAATAACTACAAAGAGGAGGCAGATA
CGTGATACCCTTAAGGTCCTTCAGCAAGCCTACAAAACTTTGGACGAGATACCGCTTGAA
GCGGAGACAGTGGAGAGAGGCTATTCCCTGGATTCTGATGCGACGGGTCTACCACGTGTC
CATGGGGTTTACGATGGAAGCTCACCATATTCGACCCCGAAGCAACCAAGGCCTAGGAAA
TCAAGCCACTCCGGGGAGCAGCAACAACCTTTCAGTGGCAATGGATTCTGATATTGCCTT
TCACGATCATCCCCTGGATTAGTAGTGATTTGAGCCAGCGGATGTGCTGGTAGCAACACA
TGATTCCGCCTTGGGTTTGTCAGTTCGGTACCCAATAGATATATGTTTTTTTTCTCTAGC
CATTGCTATTCTTTTTAGTGTTGCGCCCAACGAAAGCATTGGCGTGGTGCCAAATTTTTG
CCATGTTGCCCTCCTGTACAGTATATCACTGCCCAATCATTTCGACTTAAAATGAAACCG
GTGATGGGTATAGTTTCCTTTTTTGTTAAAAACCCAGGAAGAAGCCATGGGAACCTTTAG
TTTTAGTGCCGAGTACTTGTATCTGAACAAGGTTAGTTTTGCCGTGATAAGTCTGACATG
GTTCGTGTGAAGATGCGAAGAGGTTGTGCTACATGAATATGTTTCTTTTTTTTGCTAAAA
AAAAAAAAAAAAA

Homology of Contig U35_18273 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os01g69130.1	819	protein\|dynamin family protein, putative, expressed
Brachypodium v1_2	Bradi2g58980.1	819
Arabidopsis v10	AT4G33650.2	809	\| Symbols: DRP3A \| dynamin-related protein 3A \| chr4:16161073-16166587 FORWARD LENGTH=809