barSeed - Barley Seed Development Database

Probe CUST_17399_PI390587928

Source Contig U35_32568

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17399_PI390587928	Hv_44K_v2	ATCCTTGAACAAGAACAAATAGAGATCAATGGAGGTGGTGAGTGCTTCACACGGCGTCTT	68	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372820	3165	2e-24	63 - 122	100	60 / 60	plus	ABC26649
JLOC1	JLOC1_52962.1	3478	6e-21	207 - 265	97	57 / 59	plus
Harvest35	U35_32568	471	3e-25	69 - 128	100	60 / 60	plus

Contig Sequence (471 bp)

>U35_32568 471 Hv_44K_v2
CCACTCTGAGGTCTGAGCACACCAACCACGAACCCAAGCAGAGATGGGTTCGAGAGAGGA
ATAGAGAGATCCTTGAACAAGAACAAATAGAGATCAATGGAGGTGGTGAGTGCTTCACAC
GGCGTCTTGGGTCCCCTGCTGGGGAAGCTCACCGGTTTGCTCGCCGGTGAGTGTGCCCGT
CTGAAAGGCGTCCGCCGCGAGATCCGGTCGCTCAAGTCCGAGCTGACTGGTATGCATGCA
GCGGTCCACAAGTACATGACGCTGCAAGATCCCGATGTCCAGGTGAAAGCGTGGATATCG
ATGCTCAGGGAGCTGACCTATGACATCGAGGATGTCATCGACAAGTTCATCCACCAGCTC
GGTACTGACGGCCACCAGCACGGTCGCTTCAAGGACTTCTTCCGCAAGACTGCTCGCCAG
CTCAAGACCCTGGGCTCCCGCCGTGGAATCGCCAGCCAAATCACGATCTGA

Homology of Contig U35_32568 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None