barSeed - Barley Seed Development Database

Probe CUST_17397_PI390587928

Source Contig U35_18276

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_17397_PI390587928	Hv_44K_v2	GAGTTCTTCTCCGGCCTGGTTGTTCAATGCTTATATATCGGAGCTTCTTGTTGCAAGCAT	874	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.396	3.062	1.132	0.669	0.771	1.345
Raw	31.019	46.515	14.299	12.431	2.747	9.548

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC08434	934	3e-25	1 - 60	100	60 / 60	minus	ABC08434
Harvest35	U35_18276	934	3e-25	875 - 934	100	60 / 60	plus

Contig Sequence (934 bp)

>U35_18276 934 Hv_44K_v2
GGCTGCAGGAATTCGGACGAGGGGCCGATGATTTTAAAATTGGCCAGGATTTGCTTCTAA
GCATCAAAGAGGACACTGAATTTACTATAGTACGGGAAAACATAAAGAAGAAGCTTGAGA
TGATATGTGATGAGGTTGTTGTCAATCCCAGCAAGGCCCTTCGGAAACTTCCAAGAGTAC
AACATTTGTCAGCTCAATTAGCTGCAAGATTAAGAAATGAGGACGACGAGTTTGACATCC
TAAATGCTCTTCATCCAAGCCCAGCTGTTTGTGGCTTGCCCACTGAAGAAGCGCGCCAAT
TCATACGAGATTATGAAATTTTCGACCGTGGAATGTATGCTGGACCTGTTGGTTGGTTTG
GTGGGGCTGAAAGTGAGTTTGCTGTTGGGATTAGATCAGCACTACTTGGAAAAGGATATA
GCACTTTAGTTTATGCCGGTGCCGGGATTGTCGAAGGTACAAATCCATCTTTTGAATGGG
ATGAGCTTGATCTCAAAGCATCTCAGTTTGCAAAGTTGTTGAAGTATCAAGAACATCATA
TTTTCTACCAAGAGGCAGGAAACATGGGGACATTGATTTGAACTGTAACTAATAAGTCAT
CAGAGATTACAATGCTTAGAAAGAGGGAAGTTTTGATTTGATGGGAAGATTCTAAATGGA
GTTCGTCGGTTTGTGTGTGTGCGTAGTAAACTTGAAAGGATTTCAGCCTGATTTGCATGG
CTCCTGAAGATGCAATCACAAAAATATCGATTCGAGGAGATGACAGTGATGATAGTCGTG
GAGCGTACAAAAGATTAAATAAAAGCATATTAGATAATTATGTACAATGATTGTAACAAA
CCAGTTTAGTGCAAGTGTATATTACCATTCTTTTGAGTTCTTCTCCGGCCTGGTTGTTCA
ATGCTTATATATCGGAGCTTCTTGTTGCAAGCAT

Homology of Contig U35_18276 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g19734.1	815	1e-109	protein\|isochorismate synthase 1, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi4g28670.1	561	1e-115
Arabidopsis v10	AT1G18870.1	562	5e-68	\| Symbols: ICS2, ATICS2 \| isochorismate synthase 2 \| chr1:6515486-6519176 FORWARD LENGTH=562